NEWS
mobileRNA 1.7.0
- Added Namespace dependency to DESCRIPTION Imports/Depends entries: ‘Seqinfo’
mobileRNA 1.5.2
- Updated several functions including RNAfeatures.
mobileRNA 1.0.15
mobileRNA 1.0.14
- Fixed inaccuracies in README
- Fixed bug in RNAmergeGenomes
mobileRNA 1.0.13
mobileRNA 1.0.12
- Updated RNAfeatures and plotRNAfeatures including new parameters to
control plotting and representation of genomic features.
- Updated citation
mobileRNA 1.0.11
- Major updated to RNAfeatures. Instead identifies features independently for
the genome annotation rather than using preset features.
mobileRNA 1.0.1
- Version bump following Bioconductor updates.
- Improved the RNAfeatures function due discrepancies. Previously, calculated
width rather than relative number of features.
- Improved RNAdistribution function, including fixing a small bug, replaced
depreciated functioned and improved aesthetic and code structure.
- Introduced new plotting function plotRNAfeatures.
mobileRNA 0.99.23
- Improved RNAfeatures function
mobileRNA 0.99.22
- Fixed issues in RNAimport function
mobileRNA 0.99.20
mobileRNA 0.99.19
- Missing connective in RNAfeatures when using repeats variable.
- Added additional check for RNAsequences methods.
mobileRNA 0.99.17
- Corrected ORCID references for authors
- Amended
RNAmobile() to ensure removal of non-zero values
- Improved look of PCA plot
- Corrected documentation issue and code disparage in
plotHeatmap(), and improved styling.
- Included calculation of consensus sequence determination option for
RNAsequence()
mobileRNA 0.99.15
- Alteration of vignette and README
- Included clean FASTQ files as example data sets
- Updated R data objects
- Updated citation & news files
- Addition of new function called
mapRNA()
- Deletion of
RNAloci() and RNAmean() functions
- Additional parameters to
RNAimport() to support mRNA data importation
- Removed parallel computation in
RNAmergeGenomes()
- Improved documentation of functions and removed inconsistencies.
mobileRNA 0.99.14
Previous changes
- Added a
NEWS.md file to track changes to the package.
RNAconsensus() changed to RNAdicercall()
- Alterations to
RNAdicercall() algorithm, including tie options, altered default tidy method.
RNAdicercall() introduced new column "DicerCount" and improved the functionality, specifically the exclude parameter.
RNAmobile() introduced new parameter, "threshold"
- Improved
RNAsequences() selection algorithm to consider a threshold value, and handling ties.
- Improved error calling on functions
- Added
RNAdf2e() function
- Improvements to
plotSamplePCA() and plotHeatmap()
- Amended
RNAmergeAnnotations function to meet requirement
- Removed unnecessary man files for GFF and FASTA files on remote repo
- Fixed bug in
RNAdistribution() plot, when sample specific
- Broadened use of
RNAattributes() function.
- Updated vignette
- Updated
RNAdicercall() to allow any dicer-classification (not constricted to 20-24)
- Converted cat() to message() for user information from functions
- Amended example data
- Amended CITATION and NEWs file
- Altered examples in RNAmergeAnnotations/Genomes functions to prevent examples saving into users directory
- updates inline with bioconductor requirements
- Amended
RNAmergeGenomes() and RNAmergeAnnotations()
- Removed lazy loading of package data
RNAanalysis() changed name to RNAdifferentialAnalysis()