Package: mitology
Type: Package
Title: Study of mitochondrial activity from RNA-seq data
Version: 1.5.0
Authors@R: c(person("Stefania", "Pirrotta", role = c("cre", "aut"),
                    email = "stefania.pirrotta@unipd.it",
                    comment = c(ORCID = "0009-0004-0030-217X")),
             person("Enrica", "Calura", role = c("aut", "fnd"), 
                    email = "enrica.calura@unipd.it",
                    comment = c(ORCID = "0000-0001-8463-2432")))
Description: mitology allows to study the mitochondrial activity
        throught high-throughput RNA-seq data. It is based on a
        collection of genes whose proteins localize in to the
        mitochondria. From these, mitology provides a reorganization of
        the pathways related to mitochondria activity from Reactome and
        Gene Ontology. Further a ready-to-use implementation of
        MitoCarta3.0 pathways is included.
License: AGPL-3
biocViews: GeneExpression, RNASeq, Visualization, SingleCell, Spatial,
        Pathways, Reactome, GO
Imports: AnnotationDbi, ape, circlize, clusterProfiler, ComplexHeatmap,
        ggplot2, ggtree, magrittr, org.Hs.eg.db, ReactomePA, scales
Encoding: UTF-8
RoxygenNote: 7.3.3
Depends: R (>= 4.5.0)
LazyData: false
Suggests: Biobase, BiocStyle, GSVA, methods, rmarkdown, knitr,
        SummarizedExperiment, testthat
VignetteBuilder: knitr
BugReports: https://github.com/CaluraLab/mitology/issues
URL: https://github.com/CaluraLab/mitology
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev perl zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:04:59 UTC
RemoteUrl: https://github.com/bioc/mitology
RemoteRef: HEAD
RemoteSha: 6b9bf1537b3912c8530c5d06e52b256ec65b4754
NeedsCompilation: no
Packaged: 2026-07-08 06:02:26 UTC; root
Author: Stefania Pirrotta [cre, aut] (ORCID:
    <https://orcid.org/0009-0004-0030-217X>),
  Enrica Calura [aut, fnd] (ORCID:
    <https://orcid.org/0000-0001-8463-2432>)
Maintainer: Stefania Pirrotta <stefania.pirrotta@unipd.it>