# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "minfi" in publications use:'
type: software
license: Artistic-2.0
title: 'minfi: Analyze Illumina Infinium DNA methylation arrays'
version: 1.51.0
doi: 10.1093/bioinformatics/btu049
identifiers:
- type: doi
  value: 10.32614/CRAN.package.minfi
abstract: Tools to analyze & visualize Illumina Infinium methylation arrays.
authors:
- family-names: Hansen
  given-names: Kasper Daniel
  email: kasperdanielhansen@gmail.com
- family-names: Aryee
  given-names: Martin
- family-names: Irizarry
  given-names: Rafael A.
preferred-citation:
  type: article
  title: 'Minfi: A flexible and comprehensive Bioconductor package for the analysis
    of Infinium DNA Methylation microarrays'
  authors:
  - family-names: Aryee
    given-names: Martin J.
  - family-names: Jaffe
    given-names: Andrew E.
  - family-names: Corrada-Bravo
    given-names: Hector
  - family-names: Ladd-Acosta
    given-names: Christine
  - family-names: Feinberg
    given-names: Andrew P.
  - family-names: Hansen
    given-names: Kasper D.
  - family-names: Irizarry
    given-names: Rafael A.
  year: '2014'
  journal: Bioinformatics
  volume: '30'
  issue: '10'
  doi: 10.1093/bioinformatics/btu049
  start: '1363'
  end: '1369'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/hansenlab/minfi
commit: eeda66046cf6a85eef8e0f462bd3e7e458134530
url: https://github.com/hansenlab/minfi
contact:
- family-names: Hansen
  given-names: Kasper Daniel
  email: kasperdanielhansen@gmail.com
references:
- type: article
  title: 'SWAN: Subset quantile Within-Array Normalization for Illumina Infinium HumanMethylation450
    BeadChips'
  authors:
  - family-names: Maksimovic
    given-names: Jovana
  - family-names: Gordon
    given-names: Lavinia
  - family-names: Oshlack
    given-names: Alicia
  journal: Genome Biology
  year: '2012'
  volume: '13'
  issue: '6'
  doi: 10.1186/gb-2012-13-6-r44
  start: R44
- type: article
  title: Functional normalization of 450k methylation array data improves replication
    in large cancer studies
  authors:
  - family-names: Fortin
    given-names: Jean-Philippe
  - family-names: Labbe
    given-names: Aurelie
  - family-names: Lemire
    given-names: Mathieu
  - family-names: Zanke
    given-names: Brent W.
  - family-names: Hudson
    given-names: Thomas J.
  - family-names: Fertig
    given-names: Elana J.
  - family-names: Greenwood
    given-names: Celia M.T.
  - family-names: Hansen
    given-names: Kasper D.
  journal: Genome Biology
  year: '2014'
  volume: '15'
  issue: '12'
  doi: 10.1186/s13059-014-0503-2
  start: '503'
- type: article
  title: Low-level processing of Illumina Infinium DNA Methylation BeadArrays
  authors:
  - family-names: Triche
    given-names: Timothy J.
  - family-names: Weisenberger
    given-names: Daniel J.
  - family-names: Van Den Berg
    given-names: David
  - family-names: Laird
    given-names: Peter W.
  - family-names: Siegmund
    given-names: Kimberly D.
  journal: Nucleic Acids Research
  year: '2013'
  volume: '41'
  issue: '7'
  doi: 10.1093/nar/gkt090
  start: e90
- type: article
  title: Reconstructing A/B compartments as revealed by Hi-C using long-range correlations
    in epigenetic data
  authors:
  - family-names: Fortin
    given-names: Jean-Philippe
  - family-names: Hansen
    given-names: Kasper D.
  journal: Genome Biology
  year: '2015'
  volume: '16'
  doi: 10.1186/s13059-015-0741-y
  start: '180'
- type: article
  title: '''Gap hunting'' to characterize clustered probe signals in Illumina methylation
    array data'
  authors:
  - family-names: Andrews
    given-names: Shan V.
  - family-names: Ladd-Acosta
    given-names: Christine
  - family-names: Feinberg
    given-names: Andrew P.
  - family-names: Hansen
    given-names: Kasper D.
  - family-names: Fallin
    given-names: M. Daniele
  journal: Epigenetics & Chromatin
  year: '2016'
  volume: '9'
  doi: 10.1186/s13072-016-0107-z
  start: '56'
- type: article
  title: Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC
    array with minfi
  authors:
  - family-names: Fortin
    given-names: Jean-Philippe
  - family-names: Triche
    given-names: Timothy J.
  - family-names: Hansen
    given-names: Kasper D.
  journal: Bioinformatics
  year: '2017'
  volume: '33'
  issue: '4'
  doi: 10.1093/bioinformatics/btw691