Package: microbiomeDataSets
Title: Experiment Hub based microbiome datasets
Version: 1.21.0
Authors@R: 
    c(
      person("Leo", "Lahti", role = c("cre", "aut"),
             comment = c(ORCID = "0000-0001-5537-637X"),
             email = "leo.lahti@iki.fi"),    
      person(given = "Felix G.M.", family = "Ernst", role = c("aut"),
             email = "felix.gm.ernst@outlook.com",      
             comment = c(ORCID = "0000-0001-5064-0928")),
      person(given = "Sudarshan", "Shetty", role = c("aut"),
             email = "sudarshanshetty9@gmail.com",
             comment = c(ORCID = "0000-0001-7280-9915")),
      person(given = "Chouaib", family = "Benchraka", role = c("ctb"),
             email = "chouaib.benchraka@utu.fi",
             comment = c(ORCID = "0000-0002-1167-7848")),
      person(given = "Yagmur", family = "Simsek", role = c("ctb"))	     
	     )
Description: microbiomeDataSets is a collection of microbiome datasets
        loaded from Bioconductor'S ExperimentHub infrastructure. The
        datasets serve as reference for workflows and vignettes
        published adjacent to the microbiome analysis tools on
        Bioconductor. Additional datasets can be added overtime and
        additions from authors are welcome.
License: CC0
Encoding: UTF-8
biocViews: ExperimentHub, ExperimentData, MicrobiomeData,
        SequencingData
Depends: R (>= 4.1), SummarizedExperiment, TreeSummarizedExperiment,
        MultiAssayExperiment
Imports: methods, utils, BiocGenerics, ExperimentHub, Biostrings, ape
Suggests: knitr, rmarkdown, BiocStyle, SingleCellExperiment, testthat
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
VignetteBuilder: knitr
Config/pak/sysreqs: cmake make libicu-dev libpng-dev libuv1-dev
        libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:34:48 UTC
RemoteUrl: https://github.com/bioc/microbiomeDataSets
RemoteRef: HEAD
RemoteSha: e26aadcee8f596089078583b3387d1ce82b9e5ef
NeedsCompilation: no
Packaged: 2026-10-10 10:42:10 UTC; root
Author: Leo Lahti [cre, aut] (ORCID: <https://orcid.org/0000-0001-5537-637X>),
  Felix G.M. Ernst [aut] (ORCID: <https://orcid.org/0000-0001-5064-0928>),
  Sudarshan Shetty [aut] (ORCID: <https://orcid.org/0000-0001-7280-9915>),
  Chouaib Benchraka [ctb] (ORCID:
    <https://orcid.org/0000-0002-1167-7848>),
  Yagmur Simsek [ctb]
Maintainer: Leo Lahti <leo.lahti@iki.fi>