Package: microbiome
Type: Package
Title: Microbiome Analytics
Description: Utilities for microbiome analysis.
Encoding: UTF-8
Version: 1.35.0
Date: 2025-07-24
Authors@R: c(
    person("Leo", "Lahti", email = "leo.lahti@iki.fi",
             role = c("aut", "cre"),
	     comment = c(ORCID = "0000-0001-5537-637X")),
    person("Sudarshan", "Shetty", role = "aut",
         comment = c(ORCID = "0000-0001-7280-9915")))
biocViews: Metagenomics,Microbiome,Sequencing,SystemsBiology
License: BSD_2_clause + file LICENSE
Depends: R (>= 3.6.0), phyloseq, ggplot2
Imports: Biostrings, compositions, dplyr, reshape2, Rtsne, scales,
        stats, tibble, tidyr, utils, vegan
Suggests: BiocGenerics, BiocStyle, Cairo, knitr, rmarkdown, testthat
URL: http://microbiome.github.io/microbiome
MailingList: microbiome <microbiome-devel@googlegroups.com>
BugReports: https://github.com/microbiome/microbiome/issues
VignetteBuilder: knitr
Packaged: 2026-07-03 18:41:33 UTC; root
RoxygenNote: 7.3.2
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:46:15 UTC
RemoteUrl: https://github.com/bioc/microbiome
RemoteRef: HEAD
RemoteSha: b769911d7825662a5c89e0e809e7de75b0de953d
NeedsCompilation: no
Author: Leo Lahti [aut, cre] (ORCID: <https://orcid.org/0000-0001-5537-637X>),
  Sudarshan Shetty [aut] (ORCID: <https://orcid.org/0000-0001-7280-9915>)
Maintainer: Leo Lahti <leo.lahti@iki.fi>