Package: microbiome
Type: Package
Title: Microbiome Analytics
Description: Provides methods for microbiome data analysis and
        visualization, including compositional transformations,
        community profiling, diversity analysis, and exploration of
        taxonomic abundance data represented as phyloseq objects.
Encoding: UTF-8
Version: 1.35.1
Date: 2026-08-10
Authors@R: c(
    person("Leo", "Lahti", email = "leo.lahti@iki.fi",
             role = c("aut", "cre"),
	     comment = c(ORCID = "0000-0001-5537-637X")),
    person("Sudarshan", "Shetty", role = "aut",
         comment = c(ORCID = "0000-0001-7280-9915")),
    person("Rasmus", "Hindström", role = "ctb",
         comment = c(ORCID = "0009-0004-5731-178X")))
biocViews: Metagenomics,Microbiome,Sequencing,SystemsBiology
License: BSD_2_clause + file LICENSE
Depends: R (>= 4.5.0), phyloseq, ggplot2
Imports: Biostrings, compositions, dplyr, methods, reshape2, Rtsne,
        scales, stats, tibble, tidyr, utils, vegan
Suggests: BiocGenerics, BiocStyle, Cairo, knitr, mia, rmarkdown,
        SummarizedExperiment, testthat, TreeSummarizedExperiment
URL: http://microbiome.github.io/microbiome
MailingList: microbiome <microbiome-devel@googlegroups.com>
BugReports: https://github.com/microbiome/microbiome/issues
VignetteBuilder: knitr
Packaged: 2026-10-08 11:14:37 UTC; root
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-09-08 21:18:11 UTC
RemoteUrl: https://github.com/bioc/microbiome
RemoteRef: HEAD
RemoteSha: d1a308ba4e7f21d99da499c60e26ae0de0b55b14
NeedsCompilation: no
Author: Leo Lahti [aut, cre] (ORCID: <https://orcid.org/0000-0001-5537-637X>),
  Sudarshan Shetty [aut] (ORCID: <https://orcid.org/0000-0001-7280-9915>),
  Rasmus Hindström [ctb] (ORCID: <https://orcid.org/0009-0004-5731-178X>)
Maintainer: Leo Lahti <leo.lahti@iki.fi>