Package: miaSim
Type: Package
Version: 1.19.0
Authors@R: 
     c(person(given = "Yagmur", family = "Simsek", role = c("cre", "aut"),
              email = "yagmur.simsek.98@gmail.com"),
       person(given = "Karoline", family = "Faust", role = "aut"),
       person(given = "Yu", family = "Gao", role = "aut"),
       person(given = "Emma", family = "Gheysen", role = "aut"),
       person(given = "Daniel Rios", family = "Garza", role = "aut"),
       person(given = "Tuomas", family = "Borman", role = "aut",
             email = "tuomas.v.borman@utu.fi",
             comment = c(ORCID = "0000-0002-8563-8884")),
       person(given = "Leo", family = "Lahti", role = "aut",
              email = "leo.lahti@iki.fi",
              comment = c(ORCID = "0000-0001-5537-637X")),
       person(given = "Geraldson", family = "Muluh", role = "ctb"),
       person(given = "Akewak", family = "Jeba", role = "ctb",
             comment = c(ORCID = "0009-0007-1347-7552")))
Title: Microbiome Data Simulation
Description: Microbiome time series simulation with generalized
        Lotka-Volterra model, Self-Organized Instability (SOI), and
        other models. Hubbell's Neutral model is used to determine the
        abundance matrix. The resulting abundance matrix is applied to
        (Tree)SummarizedExperiment objects.
License: Artistic-2.0 | file LICENSE
biocViews: Microbiome, Software, Sequencing, DNASeq, ATACSeq, Coverage,
        Network
Encoding: UTF-8
RoxygenNote: 7.3.2
Depends: TreeSummarizedExperiment
Imports: SummarizedExperiment, deSolve, stats, poweRlaw,
        MatrixGenerics, S4Vectors
Suggests: ape, cluster, foreach, doParallel, dplyr, GGally, ggplot2,
        igraph, network, reshape2, sna, vegan, rmarkdown, knitr,
        BiocStyle, testthat, mia, miaViz, colourvalues, philentropy
URL: https://github.com/microbiome/miaSim
BugReports: https://github.com/microbiome/miaSim/issues
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:57:17 UTC
RemoteUrl: https://github.com/bioc/miaSim
RemoteRef: HEAD
RemoteSha: 6f6c3431128afbc54b11b1fbed61be2da0d1d835
NeedsCompilation: no
Packaged: 2026-07-02 05:47:08 UTC; root
Author: Yagmur Simsek [cre, aut],
  Karoline Faust [aut],
  Yu Gao [aut],
  Emma Gheysen [aut],
  Daniel Rios Garza [aut],
  Tuomas Borman [aut] (ORCID: <https://orcid.org/0000-0002-8563-8884>),
  Leo Lahti [aut] (ORCID: <https://orcid.org/0000-0001-5537-637X>),
  Geraldson Muluh [ctb],
  Akewak Jeba [ctb] (ORCID: <https://orcid.org/0009-0007-1347-7552>)
Maintainer: Yagmur Simsek <yagmur.simsek.98@gmail.com>