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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "miRSM" in publications use:'
type: software
license: GPL-3.0-only
title: 'miRSM: Inferring miRNA sponge modules in heterogeneous data'
version: 2.1.2
identifiers:
- type: doi
  value: 10.32614/CRAN.package.miRSM
abstract: The package aims to identify miRNA sponge or ceRNA modules in heterogeneous
  data. It provides several functions to study miRNA sponge modules at single-sample
  and multi-sample levels, including popular methods for inferring gene modules (candidate
  miRNA sponge or ceRNA modules), and two functions to identify miRNA sponge modules
  at single-sample and multi-sample levels, as well as several functions to conduct
  modular analysis of miRNA sponge modules.
authors:
- family-names: Zhang
  given-names: Junpeng
  email: zjp@dali.edu.cn
preferred-citation:
  type: article
  title: 'miRSM: an R package to infer and analyze miRNA sponge modules in heterogeneous
    data'
  authors:
  - family-names: Zhang
    given-names: Junpeng
    email: zjp@dali.edu.cn
  - family-names: Liu
    given-names: Lin
  - family-names: Xu
    given-names: Taosheng
  - family-names: Zhang
    given-names: Wu
  - family-names: Zhao
    given-names: Chunwen
  - family-names: Li
    given-names: Sijing
  - family-names: Li
    given-names: Jiuyong
  - family-names: Rao
    given-names: Nini
  - family-names: Le
    given-names: Thuc Duy
  journal: RNA Biology
  year: '2021'
  url: https://doi.org/10.1080/15476286.2021.1905341
repository: https://bioc.r-universe.dev
repository-code: https://github.com/zhangjunpeng411/miRSM
commit: f3eb1d2d14eda9eacaeb16235a1e3fc665bb8456
url: https://github.com/zhangjunpeng411/miRSM
contact:
- family-names: Zhang
  given-names: Junpeng
  email: zjp@dali.edu.cn
references:
- type: article
  title: Protocol to infer and analyze miRNA sponge modules in heterogeneous data
    using miRSM 2.0
  authors:
  - family-names: Zhang
    given-names: Junpeng
  - family-names: Wei
    given-names: Xuemei
  - family-names: Zhao
    given-names: Chunwen
  - family-names: Yang
    given-names: Haolin
  journal: STAR Protocols
  year: '2024'
  url: https://doi.org/10.1016/j.xpro.2024.103317