Version: 1.1 Text: -- Updated code to use S4 object "mirnapath" instead of S3 object. -- Changes "Enriched by Gene" and "Enriched by miRNA" not to be a concatenated long string -- almost always too long to read anyway. Version: 1.0 Category: Initial release Text: Version: 1.1 Category: Changed objects to S4 format Text: Version: 1.1.1 Category: Updated runEnrichment and mirnaTable to remove the "Enriched by miRNA Text: Version: 1.1.1 Category: concatenated strings, which were way too long to be useful Text: Version: 1.1.3 Category: Updated the miRNA-gene counts methodology; fixed Text: Version: 1.1.3 Category: the strategy for ignoring pathways with no hits Text: Version: 1.3.3 Category: Updated permutation logic to handle empty when permutations Text: Version: 1.3.3 Category: show enrichment in only a subset of overall pathways Text: