Package: methylclockData
Title: Data for methylclock package
Description: Data resources used by the methylclock package to estimate
        chronological, gestational and biological age from DNA
        methylation, and to adjust those estimates for blood cell
        composition. It provides the coefficient tables of the
        individual clocks, the CpG sets of the mitotic counters, the
        weights of the neural network clock, and example methylation
        datasets. It also provides nine cell type reference datasets
        (andrews and bakulski cord blood, blood gse35069, blood
        gse35069 chen, blood gse35069 complete, combined cord blood,
        cord blood gse68456, gervin and lyle cord blood, guintivano
        dlpfc, saliva gse48472), downloaded from meffil
        (https://github.com/perishky/meffil/), which are used to
        estimate cell counts for the extrinsic epigenetic age
        acceleration (EEAA) method. All resources are served through
        ExperimentHub.
Version: 1.21.4
Authors@R: c(person("Juan R.", "Gonzalez", ,"juanr.gonzalez@isglobal.org", role = c("aut")),
             person("Dolors", "Pelegri-Siso", ,"dolors.pelegri@isglobal.org", role = c("aut", "cre")))
BugReports: https://github.com/isglobal-brge/methylclockData/issues
URL: https://github.com/isglobal-brge/methylclockData
biocViews: SpecimenSource, ExperimentHub, Tissue, OrganismData,
        Homo_sapiens_Data
Imports: ExperimentHubData, ExperimentHub, utils
Suggests: knitr, BiocStyle, rmarkdown
License: MIT + file LICENSE
NeedsCompilation: no
Encoding: UTF-8
RoxygenNote: 7.3.3
VignetteBuilder: knitr
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-09-09 06:12:52 UTC
RemoteUrl: https://github.com/bioc/methylclockData
RemoteRef: HEAD
RemoteSha: 4787fc57de0ccf74b9e21bdb89c8d1e0eaba16df
Packaged: 2026-10-10 10:42:08 UTC; root
Author: Juan R. Gonzalez [aut],
  Dolors Pelegri-Siso [aut, cre]
Maintainer: Dolors Pelegri-Siso <dolors.pelegri@isglobal.org>