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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "methylSig" in publications use:'
type: software
license: GPL-3.0-only
title: 'methylSig: MethylSig: Differential Methylation Testing for WGBS and RRBS Data'
version: 1.17.0
doi: 10.1093/bioinformatics/btu339
abstract: MethylSig is a package for testing for differentially methylated cytosines
  (DMCs) or regions (DMRs) in whole-genome bisulfite sequencing (WGBS) or reduced
  representation bisulfite sequencing (RRBS) experiments. MethylSig uses a beta binomial
  model to test for significant differences between groups of samples. Several options
  exist for either site-specific or sliding window tests, and variance estimation.
authors:
- family-names: Park
  given-names: Yongseok
  email: yongpark@pitt.edu
- family-names: Cavalcante
  given-names: Raymond G.
  email: rcavalca@umich.edu
preferred-citation:
  type: article
  title: 'MethylSig: a whole genome DNA methylation analysis pipeline'
  authors:
  - name: Park
  - name: Yongseok
  - name: Figueroa
  - family-names: E.
    given-names: Maria
  - name: Rozek
  - family-names: S.
    given-names: Laura
  - name: Sartor
  - family-names: A.
    given-names: Maureen
  volume: '30'
  issue: '17'
  year: '2014'
  doi: 10.1093/bioinformatics/btu339
  url: http://bioinformatics.oxfordjournals.org/content/30/17/2414.abstract
  journal: Bioinformatics
  start: 2414-2422
repository: https://bioc.r-universe.dev
repository-code: https://github.com/sartorlab/methylSig
url: https://github.com/sartorlab/methylSig
date-released: '2020-04-22'
contact:
- family-names: Cavalcante
  given-names: Raymond G.
  email: rcavalca@umich.edu