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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "methylKit" in publications use:'
type: software
license: Artistic-2.0
title: 'methylKit: DNA methylation analysis from high-throughput bisulfite sequencing
  results'
version: 1.31.0
abstract: methylKit is an R package for DNA methylation analysis and annotation from
  high-throughput bisulfite sequencing. The package is designed to deal with sequencing
  data from RRBS and its variants, but also target-capture methods and whole genome
  bisulfite sequencing. It also has functions to analyze base-pair resolution 5hmC
  data from experimental protocols such as oxBS-Seq and TAB-Seq. Methylation calling
  can be performed directly from Bismark aligned BAM files.
authors:
- family-names: Akalin
  given-names: Altuna
  email: aakalin@gmail.com
- family-names: Blume
  given-names: Alexander
  email: alex.gos90@gmail.com
- family-names: Kormaksson
  given-names: Matthias
- family-names: Li
  given-names: Sheng
- family-names: Bierling
  given-names: Adrian
preferred-citation:
  type: article
  title: 'methylKit: a comprehensive R package for the analysis of genome-wide DNA
    methylation profiles'
  authors:
  - family-names: Akalin
    given-names: Altuna
    email: aakalin@gmail.com
  - family-names: Kormaksson
    given-names: Matthias
  - family-names: Li
    given-names: Sheng
  - family-names: Garrett-Bakelman
    given-names: Francine E.
  - family-names: Figueroa
    given-names: Maria E.
  - family-names: Melnick
    given-names: Ari
  - family-names: Mason
    given-names: Christopher E
  journal: Genome Biology
  year: '2012'
  volume: '13'
  issue: '10'
  start: R87
repository: https://bioc.r-universe.dev
repository-code: https://github.com/al2na/methylKit
url: https://github.com/al2na/methylKit
contact:
- family-names: Akalin
  given-names: Altuna
  email: aakalin@gmail.com
- family-names: Blume
  given-names: Alexander
  email: alex.gos90@gmail.com