NEWS

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methrix 1.8.01

• Fix error when bedgraph contains duplicated loci.

methrix 1.8.0

• No new changes

methrix 1.6.0

• No new changes

methrix 1.4.07

• Fix bug when exporting bsseq objects from methrix objects created using Methyldackel pipeline. Issue: #26

methrix 1.4.05

• rotate x axis labels by 45 degrees in report
• update 'methrix_pca()' screeplot
• added CITATION

methrix 1.4.00

• read_bedgraphs() supports bedgraphs files from "Bismark_cov", "MethylDackel", "MethylcTools", "BisSNP", "BSseeker2_CGmap"
• write_bedgraphs() supports output to multiBed and metilene file formats
• write_bigwigs() exports methrix object as bigWigs

methrix 1.2.10

• BSgenome ref build parsing error. Issue: #24
• Show which CpGs are missing when loading bedGraphs. Issue: #22
• Faster HDF5 processing. PR: #21
• include SeqStyle option in Manual write_bedgraphs() function. PE: #20
• added the argument for SeqlevelsStyle and trackline in bedgraph. PR: #19

methrix 1.2.06

• Fix BioC warnings.

methrix 1.2.05

• Methrix plot typo fix. Issue: #20

methrix 1.0.05

• Bugfixes in methrix report. Issue: #12
• Bugfixes in the coverge_filter function --> the output methrix is now sorted
• Bugfixes in the subset_methrix function --> works on unsorted methrix
• Bugfixes in read_bedgraphs function --> when all fields are present, parse_source_idx did not return M and U columns
• Added group option to coverage_filter
• Added prefix option to methrix_report
• Added keep option to snp_removal
• minor changes in plotting functions

methrix 0.99.0

• Submission to Bioconductor