Package: metapone
Type: Package
Title: Conducts pathway test of metabolomics data using a weighted
        permutation test
Version: 1.19.0
Date: 2022-8-20
Authors@R: c(
	person("Leqi", "Tian", role="aut"),
    person("Tianwei", "Yu", role="aut"),
    person("Tianwei", "Yu", email="yutianwei@cuhk.edu.cn", role="cre"))
Description: The package conducts pathway testing from untargetted
        metabolomics data. It requires the user to supply feature-level
        test results, from case-control testing, regression, or other
        suitable feature-level tests for the study design. Weights are
        given to metabolic features based on how many metabolites they
        could potentially match to. The package can combine positive
        and negative mode results in pathway tests.
Depends: R (>= 4.1.0), BiocParallel, fields, markdown, fdrtool, fgsea,
        ggplot2, ggrepel
Imports: methods
biocViews: Technology, MassSpectrometry, Metabolomics, Pathways
License: Artistic-2.0
LazyLoad: yes
NeedsCompilation: no
Suggests: rmarkdown, knitr
VignetteBuilder: knitr
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:56:51 UTC
RemoteUrl: https://github.com/bioc/metapone
RemoteRef: HEAD
RemoteSha: 696711b616bb88918456e12e23150b6b4bca4e4c
Packaged: 2026-07-03 19:49:40 UTC; root
Author: Leqi Tian [aut],
  Tianwei Yu [aut],
  Tianwei Yu [cre]
Maintainer: Tianwei Yu <yutianwei@cuhk.edu.cn>