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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "metagenomeSeq" in publications use:'
type: software
license: Artistic-2.0
title: 'metagenomeSeq: Statistical analysis for sparse high-throughput sequencing'
version: 1.47.0
doi: 10.1038/nmeth.2658
abstract: metagenomeSeq is designed to determine features (be it Operational Taxanomic
  Unit (OTU), species, etc.) that are differentially abundant between two or more
  groups of multiple samples. metagenomeSeq is designed to address the effects of
  both normalization and under-sampling of microbial communities on disease association
  detection and the testing of feature correlations.
authors:
- family-names: Paulson
  given-names: Joseph N.
  email: josephpaulson@gmail.com
- family-names: Paulson
  given-names: Joseph Nathaniel
- family-names: Olson
  given-names: Nathan D.
- family-names: Braccia
  given-names: Domenick J.
- family-names: Wagner
  given-names: Justin
- family-names: Talukder
  given-names: Hisham
- family-names: Pop
  given-names: Mihai
- family-names: Bravo
  given-names: Hector Corrada
preferred-citation:
  type: article
  title: Differential abundance analysis for microbial marker-gene surveys
  authors:
  - family-names: Paulson
    given-names: Joseph N.
    email: josephpaulson@gmail.com
  - family-names: Stine
    given-names: Oscar Colin
  - family-names: Bravo
    given-names: Hector Corrada
  - family-names: Pop
    given-names: Mihai
  year: '2013'
  journal: Nat Meth
  volume: advance online publication
  doi: 10.1038/nmeth.2658
  url: http://www.nature.com/nmeth/journal/vaop/ncurrent/abs/nmeth.2658.html
repository: https://bioc.r-universe.dev
repository-code: https://github.com/nosson/metagenomeSeq
url: https://github.com/nosson/metagenomeSeq/
date-released: '2024-03-12'
contact:
- family-names: Paulson
  given-names: Joseph N.
  email: josephpaulson@gmail.com
references:
- type: manual
  title: 'metagenomeSeq: Statistical analysis for sparse high-throughput sequncing.'
  authors:
  - family-names: Paulson
    given-names: Joseph N.
  - family-names: Olson
    given-names: Nathan D.
  - family-names: Braccia
    given-names: Domenick J.
  - family-names: Wagner
    given-names: Justin
  - family-names: Talukder
    given-names: Hisham
  - family-names: Pop
    given-names: Mihai
  - family-names: Bravo
    given-names: Hector Corrada
  year: '2013'
  notes: Bioconductor package
  url: http://www.cbcb.umd.edu/software/metagenomeSeq
- type: article
  title: Longitudinal differential abundance analysis of marker-gene surveys using
    smoothing splines
  authors:
  - family-names: Paulson*
    given-names: Joseph N.
  - family-names: Talukder*
    given-names: Hisham
  - family-names: Bravo
    given-names: Hector Corrada
  year: '2017'
  journal: biorxiv
  doi: 10.1101/099457
  url: https://www.biorxiv.org/content/10.1101/099457v1