Package: metagenomeSeq
Title: Statistical analysis for sparse high-throughput sequencing
Version: 1.55.0
Date: 2026-04-08
Author: Joseph Nathaniel Paulson, Nathan D. Olson, Domenick J. Braccia,
        Justin Wagner, Hisham Talukder, Mihai Pop, Hector Corrada Bravo
Maintainer: Joseph N. Paulson <josephpaulson@gmail.com>
Description: metagenomeSeq is designed to determine features (be it
        Operational Taxanomic Unit (OTU), species, etc.) that are
        differentially abundant between two or more groups of multiple
        samples. metagenomeSeq is designed to address the effects of
        both normalization and under-sampling of microbial communities
        on disease association detection and the testing of feature
        correlations.
License: Artistic-2.0
Depends: R(>= 3.0), Biobase, limma, glmnet, methods, RColorBrewer
Suggests: annotate, BiocGenerics, biomformat, knitr, gss, testthat (>=
        0.8), vegan, IHW, SparseArray
Imports: parallel, matrixStats, foreach, Matrix, gplots, graphics,
        grDevices, stats, utils, Wrench
VignetteBuilder: knitr
URL: https://github.com/nosson/metagenomeSeq/
BugReports: https://github.com/nosson/metagenomeSeq/issues
biocViews: ImmunoOncology, Classification, Clustering,
        GeneticVariability, DifferentialExpression, Microbiome,
        Metagenomics, Normalization, Visualization, MultipleComparison,
        Sequencing, Software
RoxygenNote: 7.1.0
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:37:34 UTC
RemoteUrl: https://github.com/bioc/metagenomeSeq
RemoteRef: HEAD
RemoteSha: 4fee4c2edf081d68109f39029c63fbcdf0938dae
NeedsCompilation: no
Packaged: 2026-06-23 06:35:07 UTC; root