Package: metagene2 Version: 1.29.0 Date: 2022-03-03 Title: A package to produce metagene plots Authors@R: c(person("Eric", "Fournier", email="ericfournier2@yahoo.ca", role=c("cre", "aut")), person("Charles", "Joly Beauparlant", email="charles.joly-beauparlant@crchul.ulaval.ca", role="aut"), person("Cedric", "Lippens", email="lippens.cedric@protonmail.com", role="aut"), person("Arnaud", "Droit", email="arnaud.droit@crchuq.ulaval.ca", role="aut")) Description: This package produces metagene plots to compare coverages of sequencing experiments at selected groups of genomic regions. It can be used for such analyses as assessing the binding of DNA-interacting proteins at promoter regions or surveying antisense transcription over the length of a gene. The metagene2 package can manage all aspects of the analysis, from normalization of coverages to plot facetting according to experimental metadata. Bootstraping analysis is used to provide confidence intervals of per-sample mean coverages. biocViews: ChIPSeq, Genetics, MultipleComparison, Coverage, Alignment, Sequencing License: Artistic-2.0 BugReports: https://github.com/ArnaudDroitLab/metagene2/issues URL: https://github.com/ArnaudDroitLab/metagene2 VignetteBuilder: knitr Depends: R (>= 4.0), R6 (>= 2.0), GenomicRanges, BiocParallel Imports: rtracklayer, tools, GenomicAlignments, GenomeInfoDb, IRanges, ggplot2, Rsamtools, purrr, data.table, methods, dplyr, magrittr, reshape2 Suggests: BiocGenerics, RUnit, knitr, BiocStyle, rmarkdown RoxygenNote: 7.1.1 Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libxml2-dev libssl-dev xz-utils zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 12:50:10 UTC RemoteUrl: https://github.com/bioc/metagene2 RemoteRef: HEAD RemoteSha: 433a7093e24c790994a9375730fb9a1644490c2a NeedsCompilation: no Packaged: 2026-07-04 03:40:36 UTC; root Author: Eric Fournier [cre, aut], Charles Joly Beauparlant [aut], Cedric Lippens [aut], Arnaud Droit [aut] Maintainer: Eric Fournier