Zhang D, Collado-Torres L (2026). megadepth: BigWig and BAM related utilities. doi:10.18129/B9.bioc.megadepth. https://github.com/LieberInstitute/megadepth - R package version 1.23.0, http://www.bioconductor.org/packages/megadepth.

Wilks C, Ahmed O, Baker DN, Zhang D, Collado-Torres L, Langmead B (2020). “Megadepth: efficient coverage quantification for BigWigs and BAMs.” bioRxiv. doi:10.1101/2020.12.17.423317. https://www.biorxiv.org/content/10.1101/2020.12.17.423317v1.

Corresponding BibTeX entries:

  @Manual{,
    title = {megadepth: BigWig and BAM related utilities},
    author = {David Zhang and Leonardo Collado-Torres},
    year = {2026},
    url = {http://www.bioconductor.org/packages/megadepth},
    note = {https://github.com/LieberInstitute/megadepth - R package
      version 1.23.0},
    doi = {10.18129/B9.bioc.megadepth},
  }

  @Article{,
    title = {Megadepth: efficient coverage quantification for BigWigs
      and BAMs},
    author = {Christopher Wilks and Omar Ahmed and Daniel N. Baker and
      David Zhang and Leonardo Collado-Torres and Ben Langmead},
    year = {2020},
    journal = {bioRxiv},
    doi = {https://doi.org/10.1101/2020.12.17.423317},
    url =
      {https://www.biorxiv.org/content/10.1101/2020.12.17.423317v1},
  }