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cff-version: 1.2.0
message: 'To cite package "mdp" in publications use:'
type: software
license: GPL-3.0-only
title: 'mdp: Molecular Degree of Perturbation calculates scores for transcriptome
  data samples based on their perturbation from controls'
version: 1.25.0
doi: 10.32614/CRAN.package.mdp
abstract: The Molecular Degree of Perturbation webtool quantifies the heterogeneity
  of samples. It takes a data.frame of omic data that contains at least two classes
  (control and test) and assigns a score to all samples based on how perturbed they
  are compared to the controls. It is based on the Molecular Distance to Health (Pankla
  et al. 2009), and expands on this algorithm by adding the options to calculate the
  z-score using the modified z-score (using median absolute deviation), change the
  z-score zeroing threshold, and look at genes that are most perturbed in the test
  versus control classes.
authors:
- family-names: Lever
  given-names: Melissa
  email: melissalever@gmail.com
- family-names: Russo
  given-names: Pedro
  email: pedro.russo@usp.br
- family-names: Nakaya
  given-names: Helder
  email: hnakaya@usp.br
repository: https://bioc.r-universe.dev
commit: 08b5bedc39df2600abca6bf3cdab0c2fc82b313c
url: https://mdp.sysbio.tools/
contact:
- family-names: Nakaya
  given-names: Helder
  email: hnakaya@usp.br