To cite matchBox in publications use: To cite matchBox in publications
use:

  AE Ross, et al. Gene expression pathways of high grade localized
  prostate cancer. The Prostate, Feb. 1-11 (2011)

A BibTeX entry for LaTeX users is

  @Article{,
    title = {{Gene expression pathways of high grade localized prostate cancer}},
    author = {Ashley E. Ross and Marchionni Luigi and Vuica-Ross Milena and Cheadle Chris and Fan Jinshui and Berman {David M} and Schaeffer {Edward M}},
    journal = {The Prostate},
    year = {2011},
    issue = {2},
    pages = {1--11},
    doi = {10.1002/pros.21373},
    pmid = {21360566},
  }

  RA Irizarry, et al. Multiple-laboratory comparison of microarray
  platforms. Nat. Meth. 2, 345-350 (2005)

A BibTeX entry for LaTeX users is

  @Article{,
    title = {{Multiple-laboratory comparison of microarray platforms}},
    author = {Rafael A. Irizarry and Warren Daniel and Spencer Forrest and Kim {Irene F} and Biswal Shyam and Frank {Bryan C} and Gabrielson Edward and Garcia {Joe G N} and Geoghegan Joel and Germino Gregory and Griffin Constance and Hilmer {Sara C} and Hoffman Eric and Jedlicka {Anne E} and Kawasaki Ernest and Martinez-Murillo Francisco and Morsberger Laura and Lee Hannah and Petersen David and Quackenbush John and Scott Alan and Wilson Michael and Yang Yanqin and Ye {Shui Qing} and Yu Wayne},
    journal = {Nat. Genet.},
    year = {2005},
    volume = {2},
    number = {5},
    pages = {345--350},
    doi = {10.1038/nmeth756},
    pmid = {15846361},
  }