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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "mastR" in publications use:'
type: software
license: MIT
title: 'mastR: Markers Automated Screening Tool in R'
version: 1.5.0
doi: 10.18129/B9.bioc.mastR
abstract: mastR is an R package designed for automated screening of signatures of
  interest for specific research questions. The package is developed for generating
  refined lists of signature genes from multiple group comparisons based on the results
  from edgeR and limma differential expression (DE) analysis workflow. It also takes
  into account the background noise of tissue-specificity, which is often ignored
  by other marker generation tools. This package is particularly useful for the identification
  of group markers in various biological and medical applications, including cancer
  research and developmental biology.
authors:
- family-names: Chen
  given-names: Jinjin
  email: chen.j@wehi.edu.au
  orcid: https://orcid.org/0000-0001-7923-5723
- family-names: Mohamed
  given-names: Ahmed
  email: mohamed.a@wehi.edu.au
  orcid: https://orcid.org/0000-0001-6507-5300
preferred-citation:
  type: manual
  title: 'mastR: Markers Automated Screening Tool in R'
  authors:
  - family-names: Chen
    given-names: Jinjin
    email: chen.j@wehi.edu.au
    orcid: https://orcid.org/0000-0001-7923-5723
  - family-names: Mohamed
    given-names: Ahmed
    email: mohamed.a@wehi.edu.au
    orcid: https://orcid.org/0000-0001-6507-5300
  year: '2024'
  url: http://www.bioconductor.org/packages/mastR
  notes: https://github.com/DavisLaboratory/mastR/mastR - R package version 1.5.0
  doi: 10.18129/B9.bioc.mastR
repository: https://bioc.r-universe.dev
repository-code: https://github.com/DavisLaboratory/mastR
url: https://davislaboratory.github.io/mastR
contact:
- family-names: Chen
  given-names: Jinjin
  email: chen.j@wehi.edu.au
  orcid: https://orcid.org/0000-0001-7923-5723
references:
- type: article
  title: 'mastR: Marker Automated Screening Tool for multi-omics data'
  authors:
  - family-names: Chen
    given-names: Jinjin
  - family-names: Mohamed
    given-names: Ahmed
  - family-names: Bhuva
    given-names: Dharmesh D.
  - family-names: Davis
    given-names: Melissa J.
  - family-names: Tan
    given-names: Chin Wee
  year: '2024'
  journal: bioRxiv
  doi: 10.1101/2024.04.24.590691
  url: https://www.biorxiv.org/content/10.1101/2024.04.24.590691v1