Package: martini Type: Package Title: GWAS Incorporating Networks Version: 1.33.0 Authors@R: c(person("Hector", "Climente-Gonzalez", email = "hector.climente@a.riken.jp", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3030-7471")), person("Chloe-Agathe", "Azencott", role = "aut", comment = c(ORCID = "0000-0003-1003-301X"))) Description: martini deals with the low power inherent to GWAS studies by using prior knowledge represented as a network. SNPs are the vertices of the network, and the edges represent biological relationships between them (genomic adjacency, belonging to the same gene, physical interaction between protein products). The network is scanned using SConES, which looks for groups of SNPs maximally associated with the phenotype, that form a close subnetwork. License: GPL-3 LazyData: TRUE Imports: igraph (>= 1.0.1), Matrix, memoise (>= 2.0.0), methods (>= 3.3.2), Rcpp (>= 0.12.8), snpStats (>= 1.20.0), stats, utils, Suggests: biomaRt (>= 2.34.1), circlize (>= 0.4.11), STRINGdb (>= 2.2.0), httr (>= 1.2.1), IRanges (>= 2.8.2), S4Vectors (>= 0.12.2), knitr, testthat, readr, rmarkdown Depends: R (>= 4.0) LinkingTo: Rcpp, RcppEigen (>= 0.3.3.5.0) RoxygenNote: 7.2.3 Encoding: UTF-8 biocViews: Software, GenomeWideAssociation, SNP, GeneticVariability, Genetics, FeatureExtraction, GraphAndNetwork, Network VignetteBuilder: knitr URL: https://github.com/hclimente/martini BugReports: https://github.com/hclimente/martini/issues Config/pak/sysreqs: libglpk-dev libxml2-dev zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 12:47:20 UTC RemoteUrl: https://github.com/bioc/martini RemoteRef: HEAD RemoteSha: f8b9bd135549a23cde14c74e00d93b6d24951400 NeedsCompilation: yes Packaged: 2026-07-03 18:48:47 UTC; root Author: Hector Climente-Gonzalez [aut, cre] (ORCID: ), Chloe-Agathe Azencott [aut] (ORCID: ) Maintainer: Hector Climente-Gonzalez