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# CITATION file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "magrene" in publications use:'
type: software
license: GPL-3.0-only
title: 'magrene: Motif Analysis In Gene Regulatory Networks'
version: 1.7.0
abstract: magrene allows the identification and analysis of graph motifs in (duplicated)
  gene regulatory networks (GRNs), including lambda, V, PPI V, delta, and bifan motifs.
  GRNs can be tested for motif enrichment by comparing motif frequencies to a null
  distribution generated from degree-preserving simulated GRNs. Motif frequencies
  can be analyzed in the context of gene duplications to explore the impact of small-scale
  and whole-genome duplications on gene regulatory networks. Finally, users can calculate
  interaction similarity for gene pairs based on the Sorensen-Dice similarity index.
authors:
- family-names: Almeida-Silva
  given-names: Fabrício
  email: fabricio_almeidasilva@hotmail.com
  orcid: https://orcid.org/0000-0002-5314-2964
- family-names: Peer
  given-names: Yves
  name-particle: Van de
  orcid: https://orcid.org/0000-0003-4327-3730
repository: https://bioc.r-universe.dev
repository-code: https://github.com/almeidasilvaf/magrene
url: https://support.bioconductor.org/t/magrene
date-released: '2022-01-21'
contact:
- family-names: Almeida-Silva
  given-names: Fabrício
  email: fabricio_almeidasilva@hotmail.com
  orcid: https://orcid.org/0000-0002-5314-2964