# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "lumi" in publications use:'
type: software
license: LGPL-2.0-or-later
title: 'lumi: BeadArray Specific Methods for Illumina Methylation and Expression Microarrays'
version: 2.57.0
abstract: The lumi package provides an integrated solution for the Illumina microarray
  data analysis. It includes functions of Illumina BeadStudio (GenomeStudio) data
  input, quality control, BeadArray-specific variance stabilization, normalization
  and gene annotation at the probe level. It also includes the functions of processing
  Illumina methylation microarrays, especially Illumina Infinium methylation microarrays.
authors:
- family-names: Huang
  given-names: Lei
  email: lhuang1998@gmail.com
- family-names: Du
  given-names: Pan
- family-names: Bourgon
  given-names: Richard
- family-names: Feng
  given-names: Gang
- family-names: Lin
  given-names: Simon
preferred-citation:
  type: article
  title: 'lumi: a pipeline for processing Illumina microarray'
  authors:
  - name: Du
  - name: P.
  - name: Kibbe
  - name: W.A.
  - name: Lin
  - name: S.M.
  journal: Bioinformatics
  year: '2008'
  publisher:
    name: Oxford University Press
    address: Oxford, UK
repository: https://bioc.r-universe.dev
date-released: '2020-10-02'
contact:
- family-names: Huang
  given-names: Lei
  email: lhuang1998@gmail.com
references:
- type: article
  title: Comparison of Beta-value and M-value methods for quantifying methylation
    levels by microarray analysis
  authors:
  - family-names: P
    given-names: Du
  - family-names: X
    given-names: Zhang
  - family-names: CC
    given-names: Huang
  - family-names: 'N'
    given-names: Jafari
  - family-names: WA
    given-names: Kibbe
  - family-names: L
    given-names: Hou
  - family-names: SM
    given-names: Lin
  journal: BMC Bioinformatics
  year: '2010'
- type: article
  title: Model-based Variance-stabilizing Transformation for Illumina Microarray Data
  authors:
  - name: Lin
  - name: S.M.
  - name: Du
  - name: P.
  - name: Kibbe
  - name: W.A.
  journal: Nucleic Acids Res
  year: '2008'
  publisher:
    name: Oxford University Press
    address: Oxford, UK
- type: article
  title: 'nuID: A universal naming schema of oligonucleotides for Illumina, Affymetrix,
    and other microarrays'
  authors:
  - name: Du
  - name: P.
  - name: Kibbe
  - name: W.A.
  - name: Lin
  - name: S.M.
  journal: Biology Direct
  year: '2007'