Package: lumi
Type: Package
Title: BeadArray Specific Methods for Illumina Methylation and
        Expression Microarrays
Version: 2.65.0
Date: 2020-10-02
Depends: R (>= 2.10), Biobase (>= 2.5.5)
Imports: affy (>= 1.23.4), methylumi (>= 2.3.2), GenomicFeatures,
        GenomicRanges, annotate, lattice, mgcv (>= 1.4-0), nleqslv,
        KernSmooth, preprocessCore, RSQLite, DBI, AnnotationDbi, MASS,
        graphics, stats, stats4, methods
Suggests: beadarray, limma, vsn, lumiBarnes, lumiHumanAll.db,
        lumiHumanIDMapping, genefilter, RColorBrewer
Author: Pan Du, Richard Bourgon, Gang Feng, Simon Lin
Maintainer: Lei Huang <lhuang1998@gmail.com>
Description: The lumi package provides an integrated solution for the
        Illumina microarray data analysis. It includes functions of
        Illumina BeadStudio (GenomeStudio) data input, quality control,
        BeadArray-specific variance stabilization, normalization and
        gene annotation at the probe level. It also includes the
        functions of processing Illumina methylation microarrays,
        especially Illumina Infinium methylation microarrays.
License: LGPL (>= 2)
LazyLoad: yes
biocViews: Microarray, OneChannel, Preprocessing, DNAMethylation,
        QualityControl, TwoChannel
NeedsCompilation: no
Packaged: 2026-07-04 22:38:31 UTC; root
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev libx11-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:32:06 UTC
RemoteUrl: https://github.com/bioc/lumi
RemoteRef: HEAD
RemoteSha: 13fc7d349d5059424e05594b5c99594a0d3e78aa