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cff-version: 1.2.0
message: 'To cite package "looking4clusters" in publications use:'
type: software
license:
- GPL-2.0-only
- GPL-3.0-only
title: 'looking4clusters: Interactive Visualization of scRNA-Seq'
version: 1.3.0
doi: 10.32614/CRAN.package.looking4clusters
abstract: Enables the interactive visualization of dimensional reduction, clustering,
  and cell properties for scRNA-Seq results. It generates an interactive HTML page
  using either a numeric matrix, SummarizedExperiment, SingleCellExperiment or Seurat
  objects as input. The input data can be projected into two-dimensional representations
  by applying dimensionality reduction methods such as PCA, MDS, t-SNE, UMAP, and
  NMF. Displaying multiple dimensionality reduction results within the same interface,
  with interconnected graphs, provides different perspectives that facilitate accurate
  cell classification. The package also integrates unsupervised clustering techniques,
  whose results that can be viewed interactively in the graphical interface. In addition
  to visualization, this interface allows manual selection of groups, labeling of
  cell entities based on processed meta-information, generation of new graphs displaying
  gene expression values for each cell, sample identification, and visual comparison
  of samples and clusters.
authors:
- family-names: Barrios
  given-names: David
  email: metal@usal.es
  orcid: https://orcid.org/0000-0003-4465-0200
- family-names: Villaverde
  given-names: Angela
  email: angelavr@usal.es
  orcid: https://orcid.org/0000-0002-7337-7218
- family-names: Prieto
  given-names: Carlos
  email: cprietos@usal.es
  orcid: https://orcid.org/0000-0001-8178-9768
repository: https://bioc.r-universe.dev
repository-code: https://github.com/BioinfoUSAL/looking4clusters/issues/
commit: c784aee8bc3f338bf9b94c92b6f200feab8dfbe1
url: https://github.com/BioinfoUSAL/looking4clusters/
date-released: '2025-10-01'
contact:
- family-names: Barrios
  given-names: David
  email: metal@usal.es
  orcid: https://orcid.org/0000-0003-4465-0200