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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "lncRna" in publications use:'
type: software
license: MIT
title: 'lncRna: A Comprehensive Workflow for Long Non-coding RNA Identification and
  Functional Analysis'
version: 1.1.0
doi: 10.32614/CRAN.package.lncRna
abstract: Provides a complete workflow for the identification, analysis, and functional
  annotation of long non-coding RNAs (lncRNAs) from RNA-Seq data. The package includes
  functions for filtering transcripts from GTF files, evaluating the performance of
  multiple coding potential prediction tools (e.g., CPC2, PLEK, CPAT), and summarizing
  their agreement. It enables systematic performance analysis of individual tools,
  "at least N" tool consensus, and all possible tool combinations. Functional analysis
  is supported through the identification of potential cis- and trans-acting interactions
  with protein-coding genes, followed by enrichment analysis. Results can be visualized
  using a variety of plots, including radar plots, clock plots, and interactive Sankey
  diagrams.
authors:
- family-names: Jastrzebski
  given-names: Jan Pawel
  email: bioinformatyka@gmail.com
  orcid: https://orcid.org/0000-0001-8699-7742
- family-names: Czopek
  given-names: Damian
  email: dcwmpl@gmail.com
  orcid: https://orcid.org/0009-0005-3471-4866
repository: https://bioc.r-universe.dev
repository-code: https://github.com/prodakt/lncRna
commit: ae94230cbb791cb2e13b18e9e8555f7a054f1ebc
url: https://github.com/prodakt/lncRna
date-released: '2026-04-28'
contact:
- family-names: Jastrzebski
  given-names: Jan Pawel
  email: bioinformatyka@gmail.com
  orcid: https://orcid.org/0000-0001-8699-7742