Package: lisaClust
Type: Package
Title: lisaClust: Clustering of Local Indicators of Spatial Association
Version: 1.21.13
Authors@R: c(
    person("Ellis", "Patrick", , "ellis.patrick@sydney.edu.au", role = c("aut", "cre")),
    person("Nicolas", "Canete", , "nicolas.canete@sydney.edu.au", role = "aut"),
    person("Nicholas", "Robertson", , "nicholas.robertson@sydney.edu.au", role = "ctb"),
    person("Alex", "Qin", , "alex.qin@sydney.edu.au", role = "ctb"),
    person("Shreya", "Rao", email = "shreya.rajeshrao@sydney.edu.au", role = "ctb"),
    person("Farhan", "Ameen", email = "fame2827@uni.sydney.edu.au", role = "ctb")
  )
Description: lisaClust provides a series of functions to identify and
        visualise regions of tissue where spatial associations between
        cell-types is similar. This package can be used to provide a
        high-level summary of cell-type colocalization in multiplexed
        imaging data that has been segmented at a single-cell
        resolution.
License: GPL (>=2)
Copyright: The C++ port of concaveman in src/core: see inst/COPYRIGHTS.
biocViews: SingleCell, CellBasedAssays, Spatial
Encoding: UTF-8
Depends: R (>= 4.1.0)
VignetteBuilder: knitr
BugReports: https://github.com/ellispatrick/lisaClust/issues
URL: https://ellispatrick.github.io/lisaClust/,
        https://github.com/ellispatrick/lisaClust
Imports: Rcpp, ggplot2, deldir, polyclip, grid, BiocParallel,
        RhpcBLASctl, spatstat.explore, spatstat.geom, BiocGenerics,
        S4Vectors, methods, stats, dplyr, SingleCellExperiment,
        SpatialExperiment, SummarizedExperiment, pheatmap,
        spatstat.random, lifecycle, rlang (>= 1.0.0)
Suggests: SpatialDatasets, spicyR (>= 1.99.38), tidySpatialExperiment,
        BiocStyle, knitr, Matrix, rmarkdown, testthat (>= 3.0.0)
LinkingTo: Rcpp
SystemRequirements: C++17
Config/testthat/edition: 3
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: libmagick++-dev gsfonts libicu-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-10-27 02:36:47 UTC
RemoteUrl: https://github.com/bioc/lisaClust
RemoteRef: HEAD
RemoteSha: a52849b521bde47ad5ffa6ea9cee1fc50dd9af45
NeedsCompilation: yes
Packaged: 2026-10-27 08:14:36 UTC; root
Author: Ellis Patrick [aut, cre],
  Nicolas Canete [aut],
  Nicholas Robertson [ctb],
  Alex Qin [ctb],
  Shreya Rao [ctb],
  Farhan Ameen [ctb]
Maintainer: Ellis Patrick <ellis.patrick@sydney.edu.au>