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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "lineagespot" in publications use:'
type: software
license: MIT
title: 'lineagespot: Detection of SARS-CoV-2 lineages in wastewater samples using
  next-generation sequencing'
version: 1.9.0
abstract: Lineagespot is a framework written in R, and aims to identify SARS-CoV-2
  related mutations based on a single (or a list) of variant(s) file(s) (i.e., variant
  calling format). The method can facilitate the detection of SARS-CoV-2 lineages
  in wastewater samples using next generation sequencing, and attempts to infer the
  potential distribution of the SARS-CoV-2 lineages.
authors:
- family-names: Pechlivanis
  given-names: Nikolaos
  email: inab.bioinformatics@lists.certh.gr
  orcid: https://orcid.org/0000-0003-2502-612X
- family-names: Tsagiopoulou
  given-names: Maria
- family-names: Maniou
  given-names: Maria Christina
- family-names: Togkousidis
  given-names: Anastasis
- family-names: Mouchtaropoulou
  given-names: Evangelia
- family-names: Chassalevris
  given-names: Taxiarchis
- family-names: Chaintoutis
  given-names: Serafeim
- family-names: Dovas
  given-names: Chrysostomos
- family-names: Petala
  given-names: Maria
- family-names: Kostoglou
  given-names: Margaritis
- family-names: Karapantsios
  given-names: Thodoris
- family-names: Laidou
  given-names: Stamatia
- family-names: Vlachonikola
  given-names: Elisavet
- family-names: Orfanou
  given-names: Aspasia
- family-names: Fragkouli
  given-names: Styliani-Christina
- family-names: Keisaris
  given-names: Sofoklis
- family-names: Chatzidimitriou
  given-names: Anastasia
- family-names: Papadopoulos
  given-names: Agis
- family-names: Papaioannou
  given-names: Nikolaos
- family-names: Argiriou
  given-names: Anagnostis
- family-names: Psomopoulos
  given-names: Fotis E.
preferred-citation:
  type: article
  title: Detecting SARS-CoV-2 lineages and mutational load in municipal wastewater
    and a use-case in the metropolitan area of Thessaloniki, Greece
  authors:
  - family-names: Pechlivanis
    given-names: Nikolaos
    email: nikosp41@gmail.com
    orcid: https://orcid.org/0000-0003-2502-612X
  - family-names: Tsagiopoulou
    given-names: Maria
  - family-names: Maniou
    given-names: Maria Christina
  - family-names: Togkousidis
    given-names: Anastasis
  - family-names: Mouchtaropoulou
    given-names: Evangelia
  - family-names: Chassalevris
    given-names: Taxiarchis
  - family-names: Chaintoutis
    given-names: Serafeim
  - family-names: Dovas
    given-names: Chrysostomos
  - family-names: Petala
    given-names: Maria
  - family-names: Kostoglou
    given-names: Margaritis
  - family-names: Karapantsios
    given-names: Thodoris
  - family-names: Laidou
    given-names: Stamatia
  - family-names: Vlachonikola
    given-names: Elisavet
  - family-names: Orfanou
    given-names: Aspasia
  - family-names: Fragkouli
    given-names: Styliani-Christina
  - family-names: Keisaris
    given-names: Sofoklis
  - family-names: Chatzidimitriou
    given-names: Anastasia
  - family-names: Papadopoulos
    given-names: Agis
  - family-names: Papaioannou
    given-names: Nikolaos
  - family-names: Argiriou
    given-names: Anagnostis
  - family-names: Psomopoulos
    given-names: Fotis E.
  journal: Scientific Reports
  year: '2022'
  url: https://doi.org/10.1038/s41598-022-06625-6
repository: https://bioc.r-universe.dev
repository-code: https://github.com/BiodataAnalysisGroup/lineagespot
url: https://github.com/BiodataAnalysisGroup/lineagespot
date-released: '2021-03-24'
contact:
- family-names: Pechlivanis
  given-names: Nikolaos
  email: inab.bioinformatics@lists.certh.gr
  orcid: https://orcid.org/0000-0003-2502-612X