Package: kissDE
Version: 1.33.0
Title: Retrieves Condition-Specific Variants in RNA-Seq Data
Description: Retrieves condition-specific variants in RNA-seq data
        (SNVs, alternative-splicings, indels). It has been developed as
        a post-treatment of 'KisSplice' but can also be used with
        user's own data.
Authors@R: c(
	person("Clara", "Benoit-Pilven", email = "clara.benoitp@gmail.com", role = "aut"),
	person("Camille", "Marchet", email = "camille.marchet@inria.fr", role = "aut"),
	person("Janice", "Kielbassa", email = "janice.kielbassa@lyon.unicancer.fr", role = "aut"),
	person("Lilia", "Brinza", role = "aut"),
	person("Audric", "Cologne", email = "audric.cologne@gmail.com", role = "aut"),
	person("Aurelie", "Siberchicot", email = "aurelie.siberchicot@univ-lyon1.fr", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-7638-8318")),
	person("Vincent", "Lacroix", email = "vincent.lacroix@univ-lyon1.fr", role = "aut"),
	person("Frank", "Picard", role = "ctb"), 
	person("Laurent", "Jacob", role = "ctb"), 
	person("Vincent", "Miele", role = "ctb"))
Imports: aods3, Biobase, DESeq2, DSS, ggplot2, gplots, graphics,
        grDevices, matrixStats, stats, utils, foreach, doParallel,
        parallel, shiny, shinycssloaders, ade4, factoextra, DT, rlang
Suggests: BiocStyle, quarto, testthat
License: GPL (>= 2)
Contact: Vincent Lacroix <vincent.lacroix@univ-lyon1.fr>
Encoding: UTF-8
biocViews: AlternativeSplicing, DifferentialSplicing,
        ExperimentalDesign, GenomicVariation, RNASeq, Transcriptomics
URL: https://github.com/lbbe-software/kissDE
BugReports: https://github.com/lbbe-software/kissDE/issues
VignetteBuilder: quarto
Config/pak/sysreqs: cmake libfreetype6-dev make libbz2-dev libicu-dev
        libjpeg-dev liblzma-dev libpng-dev libuv1-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:47:16 UTC
RemoteUrl: https://github.com/bioc/kissDE
RemoteRef: HEAD
RemoteSha: 2e4dd92d1a57606af7ccd4e4e16086959e2b05a1
NeedsCompilation: no
Packaged: 2026-07-04 08:06:54 UTC; root
Author: Clara Benoit-Pilven [aut],
  Camille Marchet [aut],
  Janice Kielbassa [aut],
  Lilia Brinza [aut],
  Audric Cologne [aut],
  Aurelie Siberchicot [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7638-8318>),
  Vincent Lacroix [aut],
  Frank Picard [ctb],
  Laurent Jacob [ctb],
  Vincent Miele [ctb]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>