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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "katdetectr" in publications use:'
type: software
license: GPL-3.0-only
title: 'katdetectr: Detection, Characterization and Visualization of Kataegis in Sequencing
  Data'
version: 1.7.0
doi: 10.1093/GIGASCIENCE/GIAD081
identifiers:
- type: doi
  value: 10.32614/CRAN.package.katdetectr
abstract: Kataegis refers to the occurrence of regional hypermutation and is a phenomenon
  observed in a wide range of malignancies. Using changepoint detection katdetectr
  aims to identify putative kataegis foci from common data-formats housing genomic
  variants. Katdetectr has shown to be a robust package for the detection, characterization
  and visualization of kataegis.
authors:
- family-names: Hazelaar
  given-names: Daan
  email: daanhazelaar@gmail.com
  orcid: https://orcid.org/0000-0002-7513-6813
- family-names: Riet
  given-names: Job
  name-particle: van
  email: j.vanriet@erasmusmc.nl
  orcid: https://orcid.org/0000-0001-7767-7923
preferred-citation:
  type: article
  title: 'Katdetectr: an R/bioconductor package utilizing unsupervised changepoint
    analysis for robust kataegis detection'
  authors:
  - family-names: Hazelaar
    given-names: Daan M.
  - family-names: Riet
    given-names: Job
    name-particle: van
    email: j.vanriet@erasmusmc.nl
    orcid: https://orcid.org/0000-0001-7767-7923
  - family-names: Hoogstrate
    given-names: Youri
  - family-names: Werken
    given-names: Harmen J.G.
    name-particle: van de
  journal: GigaScience
  year: '2023'
  volume: '12'
  issue: giad081
  doi: 10.1093/GIGASCIENCE/GIAD081
  start: 1-11
repository: https://bioc.r-universe.dev
repository-code: https://github.com/ErasmusMC-CCBC/katdetectr
commit: c0e0cc78a60b5dbaf8492671c3c2b6286e6c9de7
url: https://doi.org/doi:10.18129/B9.bioc.katdetectr
date-released: '2023-02-14'
contact:
- family-names: Hazelaar
  given-names: Daan
  email: daanhazelaar@gmail.com
  orcid: https://orcid.org/0000-0002-7513-6813