Package: karyoploteR
Type: Package
Title: Plot customizable linear genomes displaying arbitrary data
Version: 1.39.0
Date: 2025-06-20
Authors@R: 
  c(person(given = "Bernat",
           family = "Gel",
           role = c("aut", "cre"),
           email = "bgel@igtp.cat",
           comment = c(ORCID = "0000-0001-8878-349X")))
Description: karyoploteR creates karyotype plots of arbitrary genomes
        and offers a complete set of functions to plot arbitrary data
        on them. It mimicks many R base graphics functions coupling
        them with a coordinate change function automatically mapping
        the chromosome and data coordinates into the plot coordinates.
        In addition to the provided data plotting functions, it is easy
        to add new ones.
License: Artistic-2.0
Depends: R (>= 3.4), regioneR, GenomicRanges, methods
Imports: regioneR, GenomicRanges, IRanges, Rsamtools, stats, graphics,
        memoise, rtracklayer, Seqinfo, GenomeInfoDb, S4Vectors,
        biovizBase, digest, bezier, GenomicFeatures, bamsignals,
        AnnotationDbi, grDevices, VariantAnnotation
Suggests: BiocStyle, knitr, rmarkdown, markdown, testthat, magrittr,
        BSgenome.Hsapiens.UCSC.hg19,
        BSgenome.Hsapiens.UCSC.hg19.masked,
        TxDb.Hsapiens.UCSC.hg19.knownGene,
        TxDb.Mmusculus.UCSC.mm10.knownGene, org.Hs.eg.db, org.Mm.eg.db,
        pasillaBamSubset
URL: https://github.com/bernatgel/karyoploteR
BugReports: https://github.com/bernatgel/karyoploteR/issues
VignetteBuilder: knitr
biocViews: Visualization, CopyNumberVariation, Sequencing, Coverage,
        DNASeq, ChIPSeq, MethylSeq, DataImport, OneChannel
NeedsCompilation: no
Encoding: UTF-8
RoxygenNote: 7.3.2
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev liblzma-dev
        libpng-dev libuv1-dev libxml2-dev libssl-dev xz-utils
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:45:01 UTC
RemoteUrl: https://github.com/bioc/karyoploteR
RemoteRef: HEAD
RemoteSha: 3e8c8b101b3178424f9eb729607fd12a0d30d9fd
Packaged: 2026-06-10 19:19:03 UTC; root
Author: Bernat Gel [aut, cre] (ORCID: <https://orcid.org/0000-0001-8878-349X>)
Maintainer: Bernat Gel <bgel@igtp.cat>