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cff-version: 1.2.0
message: 'To cite package "jazzPanda" in publications use:'
type: software
license: GPL-3.0-only
title: 'jazzPanda: Finding spatially relevant marker genes in image based spatial
  transcriptomics data'
version: 0.99.6
abstract: This package contains the function to find marker genes for image-based
  spatial transcriptomics data. There are functions to create spatial vectors from
  the cell and transcript coordiantes, which are passed as inputs to find marker genes.
  Marker genes are detected for every cluster by two approaches. The first approach
  is by permtuation testing, which is implmented in parallel for finding marker genes
  for one sample study. The other approach is to build a linear model for every gene.
  This approach can account for multiple samples and backgound noise.
authors:
- family-names: Jin
  given-names: Melody
  email: jin.m@wehi.edu.au
  orcid: https://orcid.org/0000-0002-2222-0958
repository: https://bioc.r-universe.dev
repository-code: https://github.com/phipsonlab/jazzPanda
commit: 7b643fe34bf5ac80188aba4f4c44383a77129310
url: https://bhuvad.github.io/jazzPanda/
date-released: '2024-07-25'
contact:
- family-names: Jin
  given-names: Melody
  email: jin.m@wehi.edu.au
  orcid: https://orcid.org/0000-0002-2222-0958