To cite immLynx in publications, please use:

Belean A, Kuramoto S, Risch I, Hassman LM, Takeda A, Sonoda K-H, Yawata N, Borcherding NC, Paley MA (2026). "Single-cell sequencing of non-infectious and viral uveitis defines distinct mechanisms in ocular inflammation." Frontiers in Immunology, 17, 1916535.<doi:10.3389/fimmu.2026.1916535>

immLynx wraps several Python tools (tcrdist3, OLGA, soNNia, clusTCR, ESM-2, metaclonotypist, pyrepseq, DeepTCR and scXpand). Please also cite the original publications for the tools you use.

Corresponding BibTeX entry:

  @Article{,
    title = {Single-cell sequencing of non-infectious and viral uveitis
      defines distinct mechanisms in ocular inflammation},
    author = {Andrei Belean and Shiori Kuramoto and Isabel Risch and
      Lynn M. Hassman and Atsunobu Takeda and Koh-Hei Sonoda and Nobuyo
      Yawata and Nicholas C. Borcherding and Michael A. Paley},
    journal = {Frontiers in Immunology},
    year = {2026},
    volume = {17},
    pages = {1916535},
    doi = {10.3389/fimmu.2026.1916535},
  }