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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "immLynx" in publications use:'
type: software
license: MIT
title: 'immLynx: Linking Advanced TCR Python Pipelines and Hugging Face Models in
  R'
version: 1.1.0
doi: 10.32614/CRAN.package.immLynx
abstract: A comprehensive toolkit that bridges popular Python-based immune repertoire
  analysis tools and Hugging Face protein language models into the R environment.
  Provides unified interfaces for TCR distance calculations (tcrdist3), sequence generation
  probability (OLGA), selection inference (soNNia), clustering (clusTCR), protein
  embeddings (ESM-2), metaclone discovery (metaclonotypist). Fully compatible with
  the scRepertoire and immApex ecosystem for single-cell immune repertoire analysis.
authors:
- family-names: Borcherding
  given-names: Nick
  email: ncborch@gmail.com
  orcid: https://orcid.org/0000-0003-1427-6342
repository: https://bioc.r-universe.dev
repository-code: https://github.com/BorchLab/immLynx
commit: f5adcfcc1c2acd3b466125d6ec5651ddecd255f6
url: https://github.com/BorchLab/immLynx/
date-released: '2026-04-28'
contact:
- family-names: Borcherding
  given-names: Nick
  email: ncborch@gmail.com
  orcid: https://orcid.org/0000-0003-1427-6342