To cite immGLIPH in publications, please use:

Belean A, Kuramoto S, Risch I, Hassman LM, Takeda A, Sonoda K-H, Yawata N, Borcherding NC, Paley MA (2026). "Single-cell sequencing of non-infectious and viral uveitis defines distinct mechanisms in ocular inflammation." Frontiers in Immunology, 17, 1916535.<doi:10.3389/fimmu.2026.1916535>

immGLIPH implements the GLIPH and GLIPH2 algorithms. Please also cite the original publications:

Glanville J, Huang H, Nau A, Hatber O, Patel R, Arendt D, Pinilla C, Houghten R, Gifford D, Steinman R, Davis M (2017). “Identifying specificity groups in the T cell receptor repertoire.” Nature, 547, 94–98. doi:10.1038/nature22976.

Huang H, Wang C, Rubelt F, Scriba T, Davis M (2020). “Analyzing the Mycobacterium tuberculosis immune response by T-cell receptor clustering with GLIPH2 and genome-wide antigen screening.” Nature Biotechnology, 38, 1194–1202. doi:10.1038/s41587-020-0505-4.

Corresponding BibTeX entries:

  @Article{,
    title = {Single-cell sequencing of non-infectious and viral uveitis
      defines distinct mechanisms in ocular inflammation},
    author = {Andrei Belean and Shiori Kuramoto and Isabel Risch and
      Lynn M. Hassman and Atsunobu Takeda and Koh-Hei Sonoda and Nobuyo
      Yawata and Nicholas C. Borcherding and Michael A. Paley},
    journal = {Frontiers in Immunology},
    year = {2026},
    volume = {17},
    pages = {1916535},
    doi = {10.3389/fimmu.2026.1916535},
  }

  @Article{,
    title = {Identifying specificity groups in the T cell receptor
      repertoire},
    author = {Jacob Glanville and Huang Huang and Allison Nau and
      Olivia Hatber and Reshma Patel and David Arendt and Clemencia
      Pinilla and Richard Houghten and David Gifford and Ralf Steinman
      and Mark Davis},
    journal = {Nature},
    year = {2017},
    volume = {547},
    pages = {94--98},
    doi = {10.1038/nature22976},
  }

  @Article{,
    title = {Analyzing the Mycobacterium tuberculosis immune response
      by T-cell receptor clustering with GLIPH2 and genome-wide antigen
      screening},
    author = {Huang Huang and Chunlin Wang and Florian Rubelt and
      Thomas Scriba and Mark Davis},
    journal = {Nature Biotechnology},
    year = {2020},
    volume = {38},
    pages = {1194--1202},
    doi = {10.1038/s41587-020-0505-4},
  }