NEWS

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igvR 1.33.2

• Fixed BiocCheck ERRORs/WARNINGs: replaced Author/Maintainer fields with Authors@R [cre], added \value to enableMotifLogoPopups man page, fixed class() == check to use is().
• Updated genomeSpec URL from deprecated S3 bucket to https://igv.org/genomes/genomes.json.
• Added MotifDb:: and seqLogo:: namespace qualifiers to resolve 'no visible binding' NOTEs.
• Replaced full MIT LICENSE text with DCF stub (YEAR/COPYRIGHT HOLDER).
• Added GitHub Actions CI workflow (R-CMD-check-bioc, Bioc 3.22, R 4.5).
• Added Podman-based local CI (Containerfile, run_local_ci.R, make targets).
• Resolved all lintr violations in R/ and vignettes/ (1752 infix_spaces and line_length issues).

igvR 1.33.1

• Added CramTrack.R to Collate field in DESCRIPTION to fix build error.

igvR 1.33.0

• Version bump due to Bioconductor 3.23 devel synchronization.

igvR 1.31.1

NEW FEATURES

• Added 'CramTrack' class to support visualization of CRAM alignment files.
• Updated internal JavaScript dispatch to explicitly handle 'format: "cram"', fixing an issue where CRAM files were incorrectly parsed as BAM (GitHub Issue #40).

igvR 1.6

NEW FEATURES

• bam (Alignment) tracks now supported
• Motif logos now displayed by clicking on appropriately configured tracks
• pkgdown website (vignettes and man pages) at https://paul-shannon.github.io/igvR/index.html
• more genomes supported: hg38, hg19, hg18, mm10, bostau8, canfam3, ce11, danrer10, danrer11, dm6, gorgor4, panpan2, pantro4, pfal3d7, rn6, saccer3, susscr11, tair10
• R commands sent to the browser now return only when the Javascript command completes
• built with version 2.3.2 of igv.js