Changes in version 1.16.0 o Bioconductor 3.18 release Changes in version 1.14.0 o Bioconductor 3.17 release Changes in version 1.12.0 o Bioconductor 3.16 release Changes in version 1.10.0 o Bioconductor 3.15 release Changes in version 1.8.1 o added grid to Imports o fixed citation o updated DOI Changes in version 1.8.0 o Bioconductor 3.14 release Changes in version 1.6.0 o Bioconductor 3.13 release Changes in version 1.4.0 o Bioconductor 3.12 release Changes in version 1.2.2 o skipped Python-dependent tests on i386 systems (64-bit version of Python is required) Changes in version 1.2.0 o added blue background to IDR distribution histograms o updated roxygen2 version to 7.1.0 o added unit tests Changes in version 1.0.4 o changed max_gap default value from 0 to -1 to conform with convention o updated reference to IDR2D publication Changes in version 1.0.3 o added option to disable jitter o added min_value and max_value parameters to estimate_idr2d_hic o fix block size display for draw_hic_contact_map Changes in version 1.0.2 o added parser for HiC-Pro contact maps (.matrix and .bed files) o added function to visualize contact maps, showing only reproducible blocks Changes in version 1.0.1 o fixed alpha level in rank and value scatterplots o bold font face for axis and legend titles Changes in version 1.0.0 o added HiC code example o added summary statistics to IDR1D, IDR2D, IDR2D HiC results o added summary calls to vignettes o added alpha parameter to control transparency Changes in version 0.99.7 o refactored HiC code Changes in version 0.99.6 o added optional log scale axes to plotting functions o added error handling o adjusted log messages o added log_idr argument o added min value / max value filtering o mentioned typical HiC resolutions Changes in version 0.99.5 o fixed minor code formatting and function documentation issues o changed function names from lower camel case to snake case o updated reference in vignettes o replaced dots in variable names with underscores o added HiC functionality Changes in version 0.99.4 o fixed issue with non-standard column names o added examples to function documentation Changes in version 0.99.3 o added max.points.shown parameter Changes in version 0.99.2 o added consistent ticks and limits to IDR plot functions o updated function documentation Changes in version 0.99.1 o added reference to Li et al. paper o added diagnostics plots o changed rank order o added IDR1D functionality o fixed local / global IDR issue Changes in version 0.99.0 o initial release