Please cite the articles below for the 'ideal' software itself, or its usage in combined workflows with the 'pcaExplorer' or 'GeneTonic' software packages:

Federico Marini, Jan Linke, Harald Binder (2020). ideal: an R/Bioconductor package for Interactive Differential Expression Analysis. BMC Bioinformatics, 21, 565, <doi:10.1186/s12859-020-03819-5> <doi:10.18129/B9.bioc.ideal>.

Annekathrin Ludt, Arsenij Ustjanzew, Harald Binder, Konstantin Strauch, Federico Marini (2022). Interactive and Reproducible Workflows for Exploring and Modeling RNA-seq Data with pcaExplorer, ideal, and GeneTonic. Current Protocols, 2 (4), e411, <doi:10.1002/cpz1.411>.

Corresponding BibTeX entries:

  @Article{,
    title = {ideal: an R/Bioconductor package for Interactive
      Differential Expression Analysis},
    journal = {BMC Bioinformatics},
    author = {Federico Marini and Jan Linke and Harald Binder},
    volume = {21},
    pages = {565},
    year = {2020},
    doi = {10.1186/s12859-020-03819-5},
    url = {https://bioconductor.org/packages/ideal/},
  }

  @Article{,
    title = {Interactive and Reproducible Workflows for Exploring and
      Modeling RNA-seq Data with pcaExplorer, ideal, and GeneTonic},
    journal = {Current Protocols},
    author = {Annekathrin Ludt and Arsenij Ustjanzew and Harald Binder
      and Konstantin Strauch and Federico Marini},
    volume = {2},
    number = {4},
    pages = {e411},
    year = {2022},
    month = {Apr},
    doi = {10.1002/cpz1.411},
  }