Package: iSEEde
Title: iSEE extension for panels related to differential expression
        analysis
Version: 1.11.0
Date: 2024-10-01
Authors@R: 
    c(person("Kevin", "Rue-Albrecht", email = "kevinrue67@gmail.com",
             role = c("aut", "cre"),
             comment = c(ORCID = "0000-0003-3899-3872")),
    person("Thomas", "Sandmann", email = "tomsing1@gmail.com",
             role = c("ctb"),
             comment = c(ORCID = "0000-0002-6601-8890")),
    person("Denali Therapeutics", role = c("fnd")))
Description: This package contains diverse functionality to extend the
        usage of the iSEE package, including additional classes for the
        panels or modes facilitating the analysis of differential
        expression results. This package does not perform differential
        expression. Instead, it provides methods to embed precomputed
        differential expression results in a SummarizedExperiment
        object, in a manner that is compatible with interactive
        visualisation in iSEE applications.
License: Artistic-2.0
URL: https://github.com/iSEE/iSEEde
BugReports: https://support.bioconductor.org/t/iSEEde
biocViews: Software, Infrastructure, DifferentialExpression
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: iSEE
Imports: DESeq2, edgeR, methods, S4Vectors, shiny, SummarizedExperiment
Suggests: airway, BiocStyle, covr, knitr, limma, org.Hs.eg.db,
        RefManageR, rmarkdown, scuttle, sessioninfo, statmod, testthat
        (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libglpk-dev make libpng-dev libuv1-dev
        libxml2-dev perl zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:01:20 UTC
RemoteUrl: https://github.com/bioc/iSEEde
RemoteRef: HEAD
RemoteSha: ce821d1f937753c172528a306748540ebb94e344
NeedsCompilation: no
Packaged: 2026-07-04 05:57:04 UTC; root
Author: Kevin Rue-Albrecht [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3899-3872>),
  Thomas Sandmann [ctb] (ORCID: <https://orcid.org/0000-0002-6601-8890>),
  Denali Therapeutics [fnd]
Maintainer: Kevin Rue-Albrecht <kevinrue67@gmail.com>