Package: iSEE
Title: Interactive SummarizedExperiment Explorer
Version: 2.25.0
Date: 2025-11-16
Authors@R: c(
    person("Kevin", "Rue-Albrecht", role = c("aut", "cre"), email = "kevinrue67@gmail.com", comment = c(ORCID = "0000-0003-3899-3872")),
    person("Federico", "Marini", role="aut", email="marinif@uni-mainz.de", comment = c(ORCID = '0000-0003-3252-7758')),
    person("Charlotte", "Soneson", role="aut", email="charlottesoneson@gmail.com", comment = c(ORCID = '0000-0003-3833-2169')),
    person("Aaron", "Lun", role="aut", email="infinite.monkeys.with.keyboards@gmail.com", comment = c(ORCID = '0000-0002-3564-4813')))
Description: Create an interactive Shiny-based graphical user interface
        for exploring data stored in SummarizedExperiment objects,
        including row- and column-level metadata. The interface
        supports transmission of selections between plots and tables,
        code tracking, interactive tours, interactive or programmatic
        initialization, preservation of app state, and extensibility to
        new panel types via S4 classes. Special attention is given to
        single-cell data in a SingleCellExperiment object with
        visualization of dimensionality reduction results.
Depends: SummarizedExperiment, SingleCellExperiment
Imports: methods, BiocGenerics, S4Vectors, utils, stats, shiny,
        shinydashboard, shinyAce, shinyjs, DT, rintrojs, ggplot2 (>=
        3.4.0), ggrepel, colourpicker, igraph, vipor, mgcv, graphics,
        grDevices, viridisLite, shinyWidgets, listviewer,
        ComplexHeatmap, circlize, grid
Suggests: testthat, covr, BiocStyle, knitr, rmarkdown, scRNAseq,
        TENxPBMCData, scater, DelayedArray, HDF5Array, RColorBrewer,
        viridis, htmltools, GenomicRanges
URL: https://isee.github.io/iSEE/
BugReports: https://github.com/iSEE/iSEE/issues
biocViews: CellBasedAssays, Clustering, DimensionReduction,
        FeatureExtraction, GeneExpression, GUI, ImmunoOncology,
        ShinyApps, SingleCell, Transcription, Transcriptomics,
        Visualization
License: MIT + file LICENSE
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.3.3
Config/pak/sysreqs: cmake libglpk-dev make libpng-dev libuv1-dev
        libxml2-dev perl zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:47:29 UTC
RemoteUrl: https://github.com/bioc/iSEE
RemoteRef: HEAD
RemoteSha: f43c73682015f51e0cdd576ff749c8fcb5d15b53
NeedsCompilation: no
Packaged: 2026-07-04 12:09:20 UTC; root
Author: Kevin Rue-Albrecht [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3899-3872>),
  Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>),
  Charlotte Soneson [aut] (ORCID:
    <https://orcid.org/0000-0003-3833-2169>),
  Aaron Lun [aut] (ORCID: <https://orcid.org/0000-0002-3564-4813>)
Maintainer: Kevin Rue-Albrecht <kevinrue67@gmail.com>