hoodscanR: Cellular neighborhoods scanning from spatial transcriptomics data in R

Install released version from Bioconductor

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hoodscanR")

Install development version from GitHub

library(devtools)
devtools::install_github("DavisLaboratory/hoodscanR")

Citation

If you use hoodscanR in your research, please cite:

Liu N, Martin J, Bhuva DD, et al. (2026). hoodscanR: profiling single-cell neighborhoods in spatial transcriptomics data. Bioinformatics, 42(8), btag609. doi:10.1093/bioinformatics/btag609.

To obtain the citation and BibTeX entry in R, run:

citation("hoodscanR")