NEWS

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hoodscanR 1.1.2

Fix bugs in test with R4.4

hoodscanR 1.1.1

Small bug fix:

• when data have cell_id within the colData.

hoodscanR 1.1.0

Published in Bioconductor.

hoodscanR 0.99.5

Remove codes that are commented out.

hoodscanR 0.99.4

user perspective/experience

• documentation update about output values
• output variable/names parameter added to many functions
• validity checks for spatialCoords are added to related functions
• for loops are gone.

hoodscanR 0.99.3

code

• sapply change to vapply.
• validity checks on inputs are now added to all functions using either is(spe, "SpatialExperiment") or is(m, "matrix") etc.

vignette

• Explanation of plots and algorithm inside different functions are now added to the vignette briefly.
• BiocStyle are now used.
• BiocStyle to hyperlink packages are now used.
• Fixed typo

documentation

• data description of the test data has been added.
• cross-link key function have added to the package help page.
• the equation and theory of the calcMetrics are now added in the help page.

other

• Bioconductor installation instructions is now added to the readme file.
• code coverage is now almost 85%.
• The LICENSE placeholders is now edited.

hoodscanR 0.99.0

First submission to Bioconductor.