Package: hoodscanR
Title: Spatial cellular neighbourhood scanning in R
Version: 1.11.0
Authors@R: 
    c(person(given = "Ning",
             family = "Liu",
             role = c("aut", "cre"),
             email = "ning.liu@adelaide.edu.au",
             comment = c(ORCID = "0000-0002-9487-9305")),
      person(given = "Jarryd",
             family = "Martin",
             role = c("aut"),
             email = "",
             comment = c(ORCID = "")))
Description: hoodscanR is an user-friendly R package providing
        functions to assist cellular neighborhood analysis of any
        spatial transcriptomics data with single-cell resolution. All
        functions in the package are built based on the
        SpatialExperiment object, allowing integration into various
        spatial transcriptomics-related packages from Bioconductor. The
        package can result in cell-level neighborhood annotation
        output, along with funtions to perform neighborhood
        colocalization analysis and neighborhood-based cell clustering.
biocViews: Spatial, Transcriptomics, SingleCell, Clustering
License: GPL-3 + file LICENSE
URL: https://github.com/DavisLaboratory/hoodscanR,
        https://davislaboratory.github.io/hoodscanR/
BugReports: https://github.com/DavisLaboratory/hoodscanR/issues
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports: knitr, rmarkdown, SpatialExperiment, SummarizedExperiment,
        circlize, ComplexHeatmap, scico, rlang, utils, ggplot2, grid,
        methods, stats, RANN, Rcpp (>= 1.0.9)
LinkingTo: Rcpp
Suggests: testthat (>= 3.0.0), BiocStyle
Config/testthat/edition: 3
Depends: R (>= 4.3)
VignetteBuilder: knitr
Config/pak/sysreqs: cmake make libmagick++-dev gsfonts libicu-dev
        libpng-dev libuv1-dev libssl-dev perl zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:01:29 UTC
RemoteUrl: https://github.com/bioc/hoodscanR
RemoteRef: HEAD
RemoteSha: 09a08af3e37d1309c4091e6baa8e41835f6f5696
NeedsCompilation: yes
Packaged: 2026-07-16 05:21:24 UTC; root
Author: Ning Liu [aut, cre] (ORCID: <https://orcid.org/0000-0002-9487-9305>),
  Jarryd Martin [aut]
Maintainer: Ning Liu <ning.liu@adelaide.edu.au>