For citing the hipathia package and the HiPathia methodology please
cite:

  Hidalgo, M. R., Cubuk, C., Amadoz, A., Salavert, F.,
  Carbonell-Caballero, J., & Dopazo, J. (2017). High throughput
  estimation of functional cell activities reveals disease mechanisms
  and predicts relevant clinical outcomes. Oncotarget, 8(3), 5160–5178.
  http://doi.org/10.18632/oncotarget.14107

A BibTeX entry for LaTeX users is

  @Article{,
    title = {High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes},
    author = {Marta R. Hidalgo and Cankut Çubuk and Alicia Amadoz and Francisco Salavert and José Carbonell-Caballero and Joaquín Dopazo},
    journal = {Oncotarget},
    editor = {M. Blagosklonny and A.V. Gudkov},
    number = {8},
    volume = {3},
    publisher = {Impact Journals},
    year = {2017},
    pages = {5160--5178},
  }

This free open-source software implements academic research by the
authors and co-workers. If you use it, please support the project by
citing the appropriate journal articles.