For citing the hipathia package and the HiPathia methodology please cite:

Hidalgo, M. R., Cubuk, C., Amadoz, A., Salavert, F., Carbonell-Caballero, J., & Dopazo, J. (2017). High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes. Oncotarget, 8(3), 5160–5178. http://doi.org/10.18632/oncotarget.14107

This free open-source software implements academic research by the authors and co-workers. If you use it, please support the project by citing the appropriate journal articles.

Corresponding BibTeX entry:

  @Article{,
    title = {High throughput estimation of functional cell activities
      reveals disease mechanisms and predicts relevant clinical
      outcomes},
    author = {Marta R. Hidalgo and Cankut Çubuk and Alicia Amadoz and
      Francisco Salavert and José Carbonell-Caballero and Joaquín
      Dopazo},
    journal = {Oncotarget},
    editor = {M. Blagosklonny and A.V. Gudkov},
    number = {8},
    volume = {3},
    publisher = {Impact Journals},
    year = {2017},
    pages = {5160--5178},
  }