NEWS

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hiAnnotator 1.27.1

• Suggest 'markdown' package in DESCRIPTION and utilize hg19 as default freeze where applicable.

hiAnnotator 1.19.0

• Drop forced strand conversion to '+' and makeGRanges with add strand as '*' if none was found.

hiAnnotator 1.11.1

• GenomicRanges package update adjustments & improved tests

hiAnnotator 1.9.0

• code spacing edits & GenomicRanges package update adjustments

hiAnnotator 1.7.1

• code spacing edits & namespace conflict fixes

hiAnnotator 1.5.1

• ggplot2 update bug fixes.

hiAnnotator 1.3.2

• fixed duplicated featureName column in getSitesInFeature when allSubjectCols is TRUE.

hiAnnotator 1.3.1

• replaced plyr with dplyr

hiAnnotator 1.1.1

• added allSubjectCols & overlapType params to getSitesInFeature

hiAnnotator 0.99.9

• metadatacol bug fix

hiAnnotator 0.99.8

• plotdisFeature() obtains a geom parameter.

hiAnnotator 0.99.7

• Documentation fixes

hiAnnotator 0.99.6

• Using GRanges::sort in makeGRanges().

hiAnnotator 0.99.5

• Documentation changes.

hiAnnotator 0.99.4

NEW FEATURES

• plotdisFeature(), function to plot distance distribution to feature boundary.
• Includes sites.ctrl dataset to compliment sites dataset.

hiAnnotator 0.99.3

NEW FEATURES

• makeGRanges() inherits total functionality of makeRangedData() and an option to turn off factor to character conversion.

DEPRECATED AND DEFUNCT

• Functions resizeRangedData() & makeRangedData() has been removed in favor of using only GenomicRanges-derived objects.

BUG FIXES

• Improved seqinfo slot population method in makeGRanges()