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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "hapFabia" in publications use:'
type: software
license: LGPL-2.0-or-later
title: 'hapFabia: hapFabia: Identification of very short segments of identity by descent
  (IBD) characterized by rare variants in large sequencing data'
version: 1.47.0
abstract: A package to identify very short IBD segments in large sequencing data by
  FABIA biclustering. Two haplotypes are identical by descent (IBD) if they share
  a segment that both inherited from a common ancestor. Current IBD methods reliably
  detect long IBD segments because many minor alleles in the segment are concordant
  between the two haplotypes. However, many cohort studies contain unrelated individuals
  which share only short IBD segments. This package provides software to identify
  short IBD segments in sequencing data. Knowledge of short IBD segments are relevant
  for phasing of genotyping data, association studies, and for population genetics,
  where they shed light on the evolutionary history of humans. The package supports
  VCF formats, is based on sparse matrix operations, and provides visualization of
  haplotype clusters in different formats.
authors:
- family-names: Mitterecker
  given-names: Andreas
  email: mitterecker@bioinf.jku.at
- family-names: Hochreiter
  given-names: Sepp
  email: hochreit@bioinf.jku.at
preferred-citation:
  type: article
  title: 'HapFABIA: Identification of very short segments of identity by descent characterized
    by rare variants in large sequencing data'
  authors:
  - family-names: Hochreiter
    given-names: Sepp
    email: hochreit@bioinf.jku.at
  journal: Nucleic Acids Research
  volume: '41'
  issue: '22'
  notes: doi:10.1093/nar/gkt1013
  year: '2013'
  start: e202
repository: https://bioc.r-universe.dev
url: http://www.bioinf.jku.at/software/hapFabia/hapFabia.html
date-released: '2017-03-11'
contact:
- family-names: Mitterecker
  given-names: Andreas
  email: mitterecker@bioinf.jku.at