Package: gsean
Type: Package
Title: Gene Set Enrichment Analysis with Networks
Description: Biological molecules in a living organism seldom work
        individually. They usually interact each other in a cooperative
        way. Biological process is too complicated to understand
        without considering such interactions. Thus, network-based
        procedures can be seen as powerful methods for studying complex
        process. However, many methods are devised for analyzing
        individual genes. It is said that techniques based on
        biological networks such as gene co-expression are more precise
        ways to represent information than those using lists of genes
        only. This package is aimed to integrate the gene expression
        and biological network. A biological network is constructed
        from gene expression data and it is used for Gene Set
        Enrichment Analysis.
Version: 1.33.0
Date: 2023-05-24
Author: Dongmin Jung
Maintainer: Dongmin Jung <dmdmjung@gmail.com>
Depends: R (>= 3.5), fgsea, PPInfer
Suggests: SummarizedExperiment, pasilla, org.Dm.eg.db, AnnotationDbi,
        knitr, plotly, WGCNA, rmarkdown
License: Artistic-2.0
biocViews: Software, StatisticalMethod, Network, GraphAndNetwork,
        GeneSetEnrichment, GeneExpression, NetworkEnrichment, Pathways,
        DifferentialExpression
NeedsCompilation: yes
VignetteBuilder: knitr
Config/pak/sysreqs: libglpk-dev libicu-dev libpng-dev libxml2-dev
        libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:47:13 UTC
RemoteUrl: https://github.com/bioc/gsean
RemoteRef: HEAD
RemoteSha: c52421e638c1de8a98727e0566db0046553eb7b9
Packaged: 2026-07-04 01:47:55 UTC; root