Package: graphite
Version: 1.59.0
Date: 2026-04-26
Title: GRAPH Interaction from pathway Topological Environment
Authors@R: c(
    person("Gabriele", "Sales", email = "gabriele.sales@unipd.it", role = "cre",
           comment=c(ORCID="0000-0003-2078-5661")),
    person("Enrica", "Calura", email = "enrica.calura@gmail.com", role = "aut"),
    person("Chiara", "Romualdi", email = "chiara.romualdi@unipd.it", role = "aut"))
Description: Graph objects from pathway topology derived from KEGG,
        Panther, PathBank, PharmGKB, Reactome SMPDB and WikiPathways
        databases.
License: AGPL-3
URL: https://github.com/sales-lab/graphite
BugReports: https://github.com/sales-lab/graphite/issues
Depends: R (>= 4.2), methods
Imports: AnnotationDbi, graph (>= 1.67.1), httr, rappdirs, stats,
        utils, graphics, rlang, lifecycle, purrr, dir.expiry
Suggests: checkmate, a4Preproc, ALL, BiocStyle, clipper, codetools,
        hgu133plus2.db, hgu95av2.db, impute, knitr, org.Hs.eg.db,
        parallel, R.rsp, RCy3, rmarkdown, SPIA (>= 2.2), testthat,
        topologyGSA (>= 1.4.0)
Collate: pathway.R fetch.R conversion.R plot.R utils.R clipper.R
        graph.R spia.R tables.R topologygsa.R build.R
VignetteBuilder: R.rsp
biocViews: Pathways, ThirdPartyClient, GraphAndNetwork, Network,
        Reactome, KEGG, Metabolomics
Config/pak/sysreqs: libpng-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:35:44 UTC
RemoteUrl: https://github.com/bioc/graphite
RemoteRef: HEAD
RemoteSha: b6f2c422506edaf80ca55647fed65cce8b93505e
NeedsCompilation: no
Packaged: 2026-07-06 06:42:48 UTC; root
Author: Gabriele Sales [cre] (ORCID: <https://orcid.org/0000-0003-2078-5661>),
  Enrica Calura [aut],
  Chiara Romualdi [aut]
Maintainer: Gabriele Sales <gabriele.sales@unipd.it>