Package: goSorensen
Type: Package
Title: Statistical inference based on the Sorensen-Dice dissimilarity
        and the Gene Ontology (GO)
Version: 1.15.0
Description: This package implements inferential methods to compare
        gene lists in terms of their biological meaning as expressed in
        the GO. The compared gene lists are characterized by
        cross-tabulation frequency tables of enriched GO items.
        Dissimilarity between gene lists is evaluated using the
        Sorensen-Dice index. The fundamental guiding principle is that
        two gene lists are taken as similar if they share a great
        proportion of common enriched GO items.
Authors@R: 
  c(person("Pablo", "Flores", role = c("aut", "cre"), 
            email = "p_flores@espoch.edu.ec", 
            comment = c(ORCID = "0000-0002-7156-8547")),
    person("Jordi", "Ocana", role = c("aut", "ctb"), 
            comment = c(ORCID = "0000-0002-4736-6996")),
    person("Alex", "Mantilla", role = c("aut", "ctb"), 
	          comment = c(ORCID = "0000-0001-7047-7072")), 
    person("Alexandre", "Sanchez-Pla", role = "ctb", 
            comment = c(ORCID = "0000-0002-8673-7737")),
	  person("Miquel", "Salicru", role = "ctb", 
	          comment = c(ORCID = "0000-0001-9644-5626")))
URL: https://github.com/pablof1988/goSorensen
BugReports: https://github.com/pablof1988/goSorensen/issues
Depends: R (>= 4.5)
Imports: clusterProfiler, goProfiles, parallel, stats, stringr, withr
Suggests: BiocManager, BiocStyle, knitr, rmarkdown, org.At.tair.db,
        org.Ag.eg.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db,
        org.Dm.eg.db, org.Dr.eg.db, org.EcSakai.eg.db, org.EcK12.eg.db,
        org.Gg.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Rn.eg.db,
        org.Sc.sgd.db, org.Ss.eg.db, org.Pt.eg.db, org.Xl.eg.db, GO.db,
        ggplot2, ggrepel, DT, magick, AnnotationDbi, org.Hs.eg.db
VignetteBuilder: knitr
License: GPL-3
Encoding: UTF-8
LazyData: false
NeedsCompilation: no
biocViews: Annotation, GO, GeneSetEnrichment, Software, Microarray,
        Pathways, GeneExpression, MultipleComparison, GraphAndNetwork,
        Reactome, Clustering, KEGG
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-12 21:09:13 UTC
RemoteUrl: https://github.com/bioc/goSorensen
RemoteRef: HEAD
RemoteSha: 2d4ad98447cd238334a353098acc80e2720f5043
Packaged: 2026-06-14 06:51:24 UTC; root
Author: Pablo Flores [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7156-8547>),
  Jordi Ocana [aut, ctb] (ORCID: <https://orcid.org/0000-0002-4736-6996>),
  Alex Mantilla [aut, ctb] (ORCID:
    <https://orcid.org/0000-0001-7047-7072>),
  Alexandre Sanchez-Pla [ctb] (ORCID:
    <https://orcid.org/0000-0002-8673-7737>),
  Miquel Salicru [ctb] (ORCID: <https://orcid.org/0000-0001-9644-5626>)
Maintainer: Pablo Flores <p_flores@espoch.edu.ec>